| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,440,873 | C→T | intergenic (‑89/‑185) | ydbK ← / → ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,440,873 | 0 | C | T | 80.0% | 11.7 / 0.2 | 10 | intergenic (‑89/‑185) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (2/6); total (3/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.87e-01 | |||||||||||
CCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGCCTATTATTTATGGCGGTGTCGTTTGGCTTGAAGATCAGAGGAAGAAAAGATGCGAGCAGCGTTTTGGGTAGGGTGTGCCGCTTTATTGTTGTCG > NC_000913/1440663‑1441102 | ccGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct > 1:305195/1‑212 (MQ=255) ggCCCAGGCATCAGCCTTTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTTCAGTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCTCAGTAGTAATCTTTCAATTTTAGCAAATGGCGTTCTTTTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTaatgaatg < 1:54998/251‑1 (MQ=255) ggTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGAGGGGCAACGCGCAGGACAg < 1:27647/250‑1 (MQ=255) gCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCTCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTTTGCNTTTNNNNntt > 2:205302/1‑144 (MQ=255) gCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCTCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTTTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAggn < 1:205302/190‑2 (MQ=255) gCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCCAATGAGGGGAGCACGAAATTGCTGCGCACCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCaacaa > 1:146059/1‑184 (MQ=255) gcgcCATTACCGTCAATAGCAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCTCAGTAGTAATCTTTAAATTTTAGCAAATGGCTTTCTTTTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGcc > 1:128469/1‑251 (MQ=255) tNNATTGCGNNAATGAGGGGCGCACGAAATTGCAGCGCGCTCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTTTGCATTTTCGCTTTTGTGTc < 2:8337/99‑1 (MQ=255) gcgcgcTCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTTTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGAc < 1:160348/163‑1 (MQ=255) cAATTTTAGCAAATGGCTTTCTTTTTCATTTTCGCTTTTGTGTCCCCCACATCATCGTAATGAATGTTTTGATCAAACAGAGGGCAAAATAATAGCCATAAGAAATTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGCCTAGTATTTATGGCGGTGGCGGTTGGCTTTAAGATCAGAGGAAGAAAAGATGCGAGCAGCGTTTTGGGTAGGGTGTGCCGCTTTAttgttg < 1:321794/250‑1 (MQ=255) aTTTTAGCAAATGGCTTTCTTTTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGCCTATTATTTATGGCGGTGTCGTTTGGCTTGAAGATCAGAGGAAGAAAAGATGCGAGCAGCTTTTTGGGTAGTGTGTGCCGCTTTAGTGTTGTcn < 1:261374/251‑2 (MQ=255) | CCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAGGGCAAAAAAATAGCCATAAAAAAGTAAAAATGCGGGGCAACGCGCAGGACAGCTCTCGACGCCGCCCTCTGTGCTGCCTATTATTTATGGCGGTGTCGTTTGGCTTGAAGATCAGAGGAAGAAAAGATGCGAGCAGCGTTTTGGGTAGGGTGTGCCGCTTTATTGTTGTCG > NC_000913/1440663‑1441102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |