| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 910,820 | C→T | G77D (GGC→GAC) | poxB ← | pyruvate oxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 910,820 | 0 | C | T | 88.9% | 16.2 / ‑3.2 | 9 | G77D (GGC→GAC) | poxB | pyruvate oxidase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (4/4); total (4/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.69e-01 | |||||||||||
CGCATGGCAATCGCCAGTACTTGTGGGATCTGCTCCGGGCTGGAAACCAGCTCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGGTGGGTTTCCTGGAAATAGCCGCTGCCAATTTCGCTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGCCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGCCAGCGGCAAAGGCCGCCACTTCTTCGTGGCGGGTGGACATCCACTCGATGGTGCCCATGCGATTAAGACTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTC > NC_000913/910613‑911047 | cgcATGGCAATCGCCAGTACTTGTGGGATCTGCTCCGCGCTAGAAACCAGCCCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGCTGGGTTTCCTGGAAATAGCCGCTGCCACTTTCGCTGGAGGGCATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGgc > 1:186546/1‑227 (MQ=255) cAATCGCCAGTACTTGTGGGATCTGCTCCGGGCTGGAAACCAGCTCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGGTGGGTTTCCTGGAAATAGCCGCTGCCAATTTCGCTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCg > 1:303241/1‑239 (MQ=255) cTCCGGGCTGGAAACCAGCTCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGGTGGGTTTCCTGGAAATAGCCGCTGCCAATTTCGCTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGCCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGCCAGCGGCAAAGgccgn < 1:203191/249‑2 (MQ=255) cTCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGGTGGGTTTCCTGGAAATAGCCGCTGCCAATTTCGCTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGcc > 1:6396/1‑216 (MQ=255) cTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACTGGATTGCGGTGGTAATAGAACAGGCAGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGTCCGCCAGTTCTCCGCTAAGTTGTTCTTCAgc < 1:269542/140‑1 (MQ=255) gggAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGCCAGCGGCAAAGGCCGCCACTTCTTCGTGGCGGGTGGACATCCACtn < 1:29377/183‑2 (MQ=255) aTCGCCAGTACCGGAACGTGATTTCGGTGGCAATCGAACAGGCCGTTGATTAAGGGCATGTTGTCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAgcgc < 1:125092/121‑1 (MQ=255) gNNGTGGCANNCGAACAGGCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGcc < 2:6396/99‑1 (MQ=255) ggCCGTTGATTAAGTGCAGGTTGTCGGGGCCGCACGATCCGGCGCAGACCGGCAGTTCTCCGCTAAGTTGTGCTTCAGAGCCAGCGGCCAAGGCAGCCACTTATTCGTGGCGGGGGGACATCCCCTCCATGGTGACCATGGGCGTAAATCTGTCACTAAGACCGTTCTGAGAGGCACCTGTGCCTCCCCAGCTGCGTTTCACCCCCGACGATTCGGGTGGTTTTGCGCTATAAggtggccaaggttgtttt > 1:223611/1‑234 (MQ=255) | CGCATGGCAATCGCCAGTACTTGTGGGATCTGCTCCGGGCTGGAAACCAGCTCGCAATAGTGACTACATTCGCGGAATAGCTCTTGTGGGTGGGTTTCCTGGAAATAGCCGCTGCCAATTTCGCTGGAGGGAATATGAGCGGCAATCGCCAGTACCGGAACGTGATTGCGGTGGCAATCGAACAGGCCGTTGATTAAGTGCAGGTTGCCGGGGCCGCACGATCCGGCGCAGACCGCCAGTTCTCCGCTAAGTTGTGCTTCAGCGCCAGCGGCAAAGGCCGCCACTTCTTCGTGGCGGGTGGACATCCACTCGATGGTGCCCATGCGATTAAGACTGTCACTAAGACCGTTCAGAGAGTCGCCTGTGACTCCCCAGATGCGTTTCACCCCTGCCGATTCGAGTGTTTTGGCGATATAAGCTGCAACCGTTTGTTTC > NC_000913/910613‑911047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |