| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 741,618 | G→A | F313F (TTC→TTT) | dtpD ← | dipeptide:H(+) symporter DtpD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 741,618 | 0 | G | A | 93.3% | 33.3 / ‑3.4 | 15 | F313F (TTC→TTT) | dtpD | dipeptide:H(+) symporter DtpD |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (6/8); total (7/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.86e-01 | |||||||||||
CCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGGAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGAACAACATACTGAAGAAGGTGAGCGTCACAATCAGCCCCAGCTCCTTCCGCTGTTTCTGGTTTTCTGCTTTGCGATAAATTTTTGCCAGTACACCCAGGCCAATAATAGTCGCGACAATTAAGGCGTATACCG > NC_000913/741404‑741850 | ccAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACat > 1:126242/1‑247 (MQ=255) cATACATTGCGGACCAGCGGGCGCTTAAGGTCAGCATGAAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCg > 1:124018/1‑249 (MQ=255) gcTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATCCGCACGGTACGATTACCCCCGACACTCTCTTTTACCCCCCACGCCAGGAACTCACCGCACAGCATAACTGCGAAGTCATTAATCGACGGAAACGTCGCGTTCGGAACGGTAGAACCAAACAGAGCGCGGTTAACGAATCGGTCGATATAAAGGCTAATCGAGCTACCGCCCtgttg < 1:165211/243‑1 (MQ=255) cTTAAGGTCAGAATGAAGAATCCGGAGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGCCACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACAAAACATATCGCGGTTAACGaa > 1:248835/1‑203 (MQ=255) cAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGaac > 1:11620/1‑250 (MQ=255) cAGAATGCAGAACCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTGTTACCACCCACGCCAGGAACACACCGCACAGCAGAACTGCGAGTGCATTAATCGACTGAAACATCGCGGTCGGAATGGTATATCCAAACATATGGCGGGTAACGAAGCGGTCGATATAAAGCCGAACCGATCTACCGCCCTGTTGTGCGAAGGCCCAGaac < 1:134031/250‑1 (MQ=255) naaTGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCCCGGTACGATTACCCGCGACCCTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGaacaac > 1:58007/2‑251 (MQ=255) aaggccaagAGAAAATTTCCCCCATATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTACCGAAGCGGTCGATATAAAGGCTAATCGAGCTCCCGCCCTGTTGTGCGAAGGCCCAGAACAACATACTGAAGAAGGTGAGCGTCACAATCa < 1:9492/251‑1 (MQ=255) gccaagAGCAAATTTCCCCCAGAGGCGCACGGTACGAGTACCCGCGACACTCTCTGGTAGCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGa < 1:301270/130‑1 (MQ=255) cAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGGAACATCGCGGTCGGAAc > 1:146797/1‑113 (MQ=255) cACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAAcc < 1:8803/114‑1 (MQ=255) acccacGCCAGGAACAAACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTAGGAACGGTATAACCaa > 1:245569/1‑82 (MQ=255) ccAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGAACAACATACTGAAGAAGGTGAGCGTCACAATCAGCCCCAGCTCCTTCCGCTGTTTCTgg < 1:291994/206‑1 (MQ=255) ngnccnGCATANCTGCNAAGGCATTAATCGACNGAAACATCGCGGTCGGAACNNTNTAACCNAACat < 2:126242/63‑1 (MQ=255) gAAGGCATTAATCGACTGAAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGAACAACATACTGAAGAAGGTGAGCGTCACAATCAGCCCCAGCTCCTGCCGCTGTTTCTGGTTTTCTGCTTTGCGATAAATTTTTGCCAGTACACCCAGGCCAATAATAGTCGCGACAATTAAGGCGTATACCg < 1:121351/251‑1 (MQ=255) | CCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGGAACACACCGCACAGCATAACTGCGAAGGCATTAATCGACTGGAACATCGCGGTCGGAACGGTATAACCAAACATATCGCGGTTAACGAAGCGGTCGATATAAAGGCTAATCGAGCTACCGCCCTGTTGTGCGAAGGCCCAGAACAACATACTGAAGAAGGTGAGCGTCACAATCAGCCCCAGCTCCTTCCGCTGTTTCTGGTTTTCTGCTTTGCGATAAATTTTTGCCAGTACACCCAGGCCAATAATAGTCGCGACAATTAAGGCGTATACCG > NC_000913/741404‑741850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |