| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 712,964 | C→T | intergenic (‑162/‑23) | ybfF ← / → seqA | esterase/negative modulator of initiation of replication |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 712,964 | 0 | C | T | 90.0% | 18.6 / ‑3.2 | 10 | intergenic (‑162/‑23) | ybfF/seqA | esterase/negative modulator of initiation of replication |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/5); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01 | |||||||||||
GGTTTTGTGCAGTTTGCGCGCGGATATTCAATTTCATGGCAAAGTTCTTTTTTTCGCGTTGTCGGGTTAGGGTATTATGTTGACCATTGTGCCACAGGGCTGCAACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAATTTTCCGCCGCATCACAGCCTGCTGCTCCGGTGACGAAAGAGGTTCGCGTTGCGTCACCTGCTATCGTCGAAGCGAAGCCGGT > NC_000913/712766‑713171 | ggTTTTGTGCTGTTTGCGCGCGGATATTCAATTTCATGGCAAAGTTCTTTTTTTCGCGTTGTCGGGTTAGGGTATTATGTTGACCATTGTGCCACAGGGCTGCAACAAAGAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCTGGATTTATTCATATACACCTGGCGACTTGTAGTCAGTTAAGACACGGCACTGTATTAAGATGAAAACGATTGAAGTTGATGATGAAc < 1:127783/249‑1 (MQ=255) gTTAGGGTATTATGTTGACCATTGTGCCACAGGGCTGAAACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATc > 1:139708/1‑233 (MQ=255) tatGTTGACCATTGTGCCACAGGGCTGCAACAAATAAGGTTTATTCCTAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCGAGATTTCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAAtt < 1:188251/250‑1 (MQ=255) ggCTGCAACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAATTTTCCGCCGCATCACAGCctgctg > 1:187763/1‑251 (MQ=255) gCAACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAATTTTCCGCCGCATCACAGCCTGCTGCTcc > 1:22376/1‑251 (MQ=255) ttttCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTACAGTACCAGCCACACTAAGCATATCGGCGAGAGCTCATCCGACATAGTACAGCGTATGTTGAAAATTTCCGCCGCATCACAGCCTGCTGCTCCGGTGACGAAAGATGTTCGCGTTGc < 1:55210/250‑1 (MQ=255) gACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACTCTGCACTGGATTAAGATGAACACGATTNNAGTtga > 2:26628/1‑96 (MQ=255) gCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGACTCTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTAAAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAATTTTCCGCCGAATCACAGCCTGCTGCTCCGGTGACGAAAGAGGTTCGCGTTGCGTCACCTGCTATCGTCGAAGCGAAGCCGGt < 1:26628/251‑1 (MQ=255) ccGGGCTTTATTCATATACTCCTGGCNACTTGTNNTCNGTTAAGac > 2:72862/1‑46 (MQ=37) ccGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGTTAAGac < 1:72862/46‑1 (MQ=255) | GGTTTTGTGCAGTTTGCGCGCGGATATTCAATTTCATGGCAAAGTTCTTTTTTTCGCGTTGTCGGGTTAGGGTATTATGTTGACCATTGTGCCACAGGGCTGCAACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGCTTGACGCTATCCGCTGCCGGGATTTATTCATATACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGATGAAAACGATTGAAGTTGATGATGAACTCTACAGCTATATTGCCAGCCACACTAAGCATATCGGCGAGAGCGCATCCGACATTTTACGGCGTATGTTGAAATTTTCCGCCGCATCACAGCCTGCTGCTCCGGTGACGAAAGAGGTTCGCGTTGCGTCACCTGCTATCGTCGAAGCGAAGCCGGT > NC_000913/712766‑713171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |