| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,519,679 | C→T | A216T (GCC→ACC) | yjhU ← | putative DNA‑binding transcriptional regulator YjhU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,519,679 | 0 | C | T | 92.9% | 27.1 / ‑3.6 | 14 | A216T (GCC→ACC) | yjhU | putative DNA‑binding transcriptional regulator YjhU |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (7/6); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
TTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCCTTAGCTGAGCCAGACTGATTCCCAGAATACGCTGGTCAACATCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGCTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCACGTGCAGCGAGGCGACACGGCCTGAAAGCTTGTAGGCGATTTGCGATGAGGATTCAATGATCGTCAGGTCTGGCTGAGATGGCATGGAACCGAGCATCTGTATAACGGTGACATTTTTACATGACTTCGGCGTCATGGTTTTGCTCATCTG > NC_000913/4519446‑4519925 | ttCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCCTTAGCTGAGCCAGACTGATTCCCAGAATACGCTGGTCAACATCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGGCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTGGTACAGCGAg < 1:74332/248‑1 (MQ=255)ttCCCCACCAGCAAGGAAGAGCGTCCGTTCAATCTGCCTTAGCTGTGCCAGACTGATTCCCAGAATACGCTGGTCAACATCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCATCACGCCCACCCTGATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGCTTTCGTACAGCGAGtn < 1:38994/250‑2 (MQ=255) gCTGAGCCAGACTGCTTCCCAGAATACGCTGGTCAACATCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAATtcgat > 1:110992/1‑227 (MQ=255) tCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGgc > 1:13204/1‑230 (MQ=255) gAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGCGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTAGTACAGc < 1:221957/134‑1 (MQ=255) gAAGCGAANANNNANNGCACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTNTTCAGCACGCCCACCNGCNTCAGNGGTNTTTCATCAAGCGCGTTACCAACGACAAAAAAGGTTTTCGTACAGc > 2:221957/1‑134 (MQ=255) caAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCtt > 1:216861/1‑192 (MQ=255) cacCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATGTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCGCTTCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCTCGTGCAGCGAGGCGACACGGCCTGAAAGCTTGTAGGCGATTTGCGATGAg < 1:141565/251‑1 (MQ=255) aCGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGc < 1:326468/102‑1 (MQ=255) cGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTACAGCGCGTCAGACCGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCACGTGCAGCGAGGCGACACGGCCTGCAAGCTTGTAGGCGATTTGCGATGAGGATTCAATGATCGTCAGGTCTGGCTGAGATggggatcggaagggcacacgt > 1:47329/1‑232 (MQ=255) aCCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGTTTTCGTCCAGCGAGTCAGAACGTCAAAAt > 1:159411/1‑79 (MQ=255) cgTTACCCNCGACNANNNAGGTTNTCGTACAGCNAGTCAGAACGTCAAAATTCNATCGaa > 2:31783/1‑60 (MQ=255) cgTTACCCACGACAAAAAAGGTTTTCGTACAGCGAGTCAGAACGTCAAAAGTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCACGTGCAGCGAGGcn < 1:31783/131‑2 (MQ=255) aaGGTTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCACGAGCAGCGAGGCGACACGGCCTGAAAGCTTGTAGGCGATTTGCGATGAGTATTCAATGATCGTCAGGTCTGGCTGAGATGGCATGGAACCGAGCATCTGTATAACGGTGACATTTTTACATGACTTCGGCGTCATGGTTTTGCTCATCTg < 1:323629/251‑1 (MQ=255) | TTCCCCACCAGCAAGGAAGATCTTCCGTTCAATCTGCCTTAGCTGAGCCAGACTGATTCCCAGAATACGCTGGTCAACATCAGCCACGACGGGCATCCCTTCCTTGTCATAGAAGCGACCACAAATGACACCTACTGCGCCTAAATCCCGATACGTCTGCATTTCCTTCTTATTCAGCACGCCCACCCGAATCAGGGGATTTTCATCAAGCGCGTTACCCACGACAAAAAAGGCTTTCGTACAGCGAGTCAGAACGTCAAAATTCGATCGAATAATAGGCTCTGCCTGTAACTCCATGGCCAGTCTGGCGCTTGATACCACGGCGGGCACGTGCAGCGAGGCGACACGGCCTGAAAGCTTGTAGGCGATTTGCGATGAGGATTCAATGATCGTCAGGTCTGGCTGAGATGGCATGGAACCGAGCATCTGTATAACGGTGACATTTTTACATGACTTCGGCGTCATGGTTTTGCTCATCTG > NC_000913/4519446‑4519925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |