| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,512,213 | C→T | A68T (GCG→ACG) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,512,213 | 0 | C | T | 93.8% | 37.1 / ‑3.7 | 18 | A68T (GCG→ACG) | fecD | ferric citrate ABC transporter membrane subunit FecD |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (10/5); total (12/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.41e-01 | |||||||||||
GGTGAGCGCCAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGCCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGCAAGGGTGATGAAAATAACCAGCGCAATTTTCATCCTCGCCTCCTCACA > NC_000913/4511992‑4512429 | ggTGAGCGCCATCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTg < 1:11551/251‑1 (MQ=255) tggtggGTCTTGTCCAGCATCTGCAGCAATATCACCCCCGCCATGCCGCCCGCAAAGTCCAGCAGCGGCATCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGTCCAGGCTGGCGGCATTGTTAACACCGAGAATATCCGGTGAGGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTc < 1:220312/250‑1 (MQ=255) cAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGTCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGGACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTcagc < 1:117046/251‑1 (MQ=255) cagcagCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTG‑CGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAACAAGCGCGGCAGTCGGTACTCCATCAATTCATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCagcagc < 1:286364/246‑1 (MQ=255) gcaCCATCACGGGCAGTGACGGCGTAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACAGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAg > 1:298281/1‑170 (MQ=255) ggCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGTAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTcc > 1:48530/1‑251 (MQ=255) nggCATAAGAAGTAGAGCCCCCACAGAGGCCCGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCAAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGACACGGCACGGGGATCACTCCCATATgg > 1:37595/2‑250 (MQ=255) gaagTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGGTGCGCAGAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCCTATGGAGTGATAAc > 1:230377/1‑251 (MQ=255) tAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTg < 1:189078/128‑1 (MQ=255) nccAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGc > 1:94342/2‑251 (MQ=255) gCCAGGCTGGCGGCATGGTTAACAACGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCAGGCCCGCCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGAGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGc > 1:207559/1‑251 (MQ=255) cAGGCTGGCGGCATGGTTAACACCGAGATTATCCGGTGATGCCAGAGGGTTGCGCACTATCCCCTGTATCAGCACGTCCGTCCCGGCGAGGGCTGCACCGACAAACAGTTCCAGGAGTAAGCGCAGCAGTCGGTACTCCATCCAAACATAATAATGGTCGTGTCCgacc > 1:146443/1‑166 (MQ=255) cAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCACCTGTATCAGCACGCCCGTCACGGCGCGGGCCGCACCGACAAACAGTGCCAGCAGCAAg > 1:148892/1‑121 (MQ=255) ggcggcATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAACACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCCAGCGCGGCAGTCGGTACTCCATCACTACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGCAAGGGtg > 1:157268/1‑250 (MQ=255) ccGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCACGTCACGGCGAGGGCTGCACCGACAAAAAGTGCCAGCAGAAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTcagcag > 1:211190/1‑164 (MQ=255) ccGGTGATGCCAGAGGGGTGCGCACAATCCCCTGTATCAGCACCCCCGGCACGGCGAGGGCTGCAACGACAAACAGTGCCAGCAGCAAGCGCGGTAGTCGGTGCTCCATCAATACATAATAATGCTCGTCTCCGGCCTGCCAGTCGGTCAGCAGCGCTCGCCACGGCACGGGGATCACTCCCAGATGGAGTGATAACAGCGCACAGCCCTCCAGGGCAAGGGTGATGAAAATAACCAGCGCAATTTTCATc < 1:315191/251‑1 (MQ=255) gTTGCGCACAATCCCCTGTATCAGCACGCCCGACACCGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGTCAAGGATGCTGAAAATAACCAGAGCAATTTTCATCCTCGCCTCCTcaca > 1:118004/1‑249 (MQ=255) tCAGCACGCCCGTCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGCAAGGGTGATGAAAATAACCAGCGCAATTTTc > 1:15444/1‑212 (MQ=255) | GGTGAGCGCCAGCTTCATCGGCTGGTGGGTCTTTGCCAGCATCTTCAGCAATATCAACCCCGCCATGCCGCCCGCAAAGGCCAGCAGCGGCAGCACCATCACGGGCAGTGACGGCATAAGAAGTAGAGCCCCCACAGAGGCCAGGCTGGCGGCATGGTTAACACCGAGAATATCCGGTGATGCCAGAGGGTTGCGCACAATCCCCTGTATCAGCACGCCCGCCACGGCGAGGGCTGCACCGACAAACAGTGCCAGCAGCAAGCGCGGCAGTCGGTACTCCATCAATACATAATAATGCTCGTGTCCGGCCTGCCAGTCGGTCAGCAGCGCGCGCCACGGCACGGGGATCACTCCCATATGGAGTGATAACAGCGCACAGCCCGCCAGGGCAAGGGTGATGAAAATAACCAGCGCAATTTTCATCCTCGCCTCCTCACA > NC_000913/4511992‑4512429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |