| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,478,709 | C→T | I79I (ATC→ATT) | rraB → | ribonuclease E inhibitor protein B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,478,709 | 0 | C | T | 92.9% | 30.4 / ‑6.1 | 14 | I79I (ATC→ATT) | rraB | ribonuclease E inhibitor protein B |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (7/6); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACAGCGTGAAGAAACACGTTTGATTATTGAAGAATTACTGGAAGATGGCAGCGATCCGGACGCGCTGTACACCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATCCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAG > NC_000913/4478497‑4478952 | gaaCAGCGTGACGAAACACGTTTGATTATTGAAGAATTACTGGAAGATGGCAGCGATCCGGACGCGCTGTACACCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGCCCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGc > 1:42504/1‑251 (MQ=255) gaaACACGTTTGATTATTGAAGAATTACTGGAAGATGGCAGCGATCCGGACGCGCTGTACACCATCGCACACCATCTTTCCGCAGCCGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGaac > 1:286050/1‑250 (MQ=255) cgcTGTACACCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCCTGGAAAAAACAGCAGTTGAAGCGATTAAACTCGGTTACGCAGTGACCGATCCCGAAGAGCTGGACGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGc > 1:47110/1‑187 (MQ=255) acacCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACttt > 1:108844/1‑251 (MQ=255) acacCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCATGGAAAAAGAAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGAGACCGATCCAGAAGAGCTGGAGGTTGAAGATGGTGATATCGCGATTTGATGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACttt > 1:313766/1‑251 (MQ=255) cGCAGACGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATgn < 1:58771/159‑2 (MQ=255) ggAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGTGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAAGTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATg < 1:21960/248‑1 (MQ=255) gcagTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGGGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGAAGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACg > 1:305089/1‑250 (MQ=255) gTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAg > 1:5797/1‑77 (MQ=255) gTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAg < 2:5797/77‑1 (MQ=255) gAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGGCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTcc < 1:107865/251‑1 (MQ=255) tCGTGATTTGCTGCGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCg < 1:176918/171‑1 (MQ=255) gATTGGCTGCGACATCCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGACGATGAAGACGATGACGGAGGTCGCCACTAATTAAACGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGc < 1:156015/250‑1 (MQ=255) gcGACATTCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTGCTTTGAAGATCCTAACGGCGAAGATGGCGACGAGGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAg < 1:180143/251‑1 (MQ=255) | GAACAGCGTGAAGAAACACGTTTGATTATTGAAGAATTACTGGAAGATGGCAGCGATCCGGACGCGCTGTACACCATCGAACACCATCTTTCCGCAGACGATCTGGAAACCCTGGAAAAAGCAGCAGTTGAAGCGTTTAAACTCGGTTACGAAGTGACCGATCCAGAAGAGCTGGAAGTTGAAGATGGTGATATCGTGATTTGCTGCGACATCCTCAGCGAGTGCGCGTTGAATGCCGATCTGATCGATGCCCAGGTTGAACAACTGATGACGCTGGCAGAGAAATTTGACGTTGAGTACGACGGATGGGGCACTTACTTTGAAGATCCTAACGGCGAAGATGGCGACGATGAAGATTTTGTCGATGAAGACGATGACGGAGTTCGCCACTAATTAAGCGTAGCGCATCAGGCCCAGGTAGTTCCTGCAACCTGGTGAATTTGTAGCCCGGATAAG > NC_000913/4478497‑4478952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |