| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,415,263 | C→T | P330L (CCA→CTA) | aidB → | putative acyl‑CoA dehydrogenase AidB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,415,263 | 0 | C | T | 92.3% | 23.9 / ‑3.3 | 13 | P330L (CCA→CTA) | aidB | putative acyl‑CoA dehydrogenase AidB |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (3/9); total (3/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 | |||||||||||
GGAGTTTCAGGATGCCATTGGTTGGTTGTTGGGGCTGGAAGGGGAAGGAATTCGTCTGATCCTGAAAATGGGTGGGATGACGCGTTTTGATTGCGCCCTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCCATTGATCCAACAGCCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTTCGTCTTGCGCGAGCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCTGTGGGCGCGTTTATTTACGCCTGCGGCAAAATTTGTGATCTGCAAAAGAGGTATGCCGTTTGTGGCCGAAGCGATGGAGGTGCTGGGCGGCATTGGTTATTGCGAGGAGAG > NC_000913/4415087‑4415500 | ggAGTTTCAGGATGCCATTGGTTGGTTGTTGGGGCTGGAAGGGGAAGGAATTCGTCTGATCCTGAAAATGGGTGGGATGACGCGTTTTGATTGCGCCCTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTGTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGc < 1:155583/251‑1 (MQ=255) ggaaggggaaggAATTCGTCTGATCCTGAAAATGGGTGGGATGACGCGTTTTGATTGCGCCCTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCCATTTATCCAACAGCCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTTCGTCTTGCGCGAGCGTGGGACCGGCGTGCCg < 1:240585/251‑1 (MQ=255) ggtgggATGACGCGTTTTGATTGCGCCCTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGGCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAGACGGCGTTGCTGGTTCGTCTGGCGCGATCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCTGTGGGCGCGTTTATTTAc < 1:178034/251‑1 (MQ=255) cTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTTCGTCTTGCGCGAGCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCTGTGGGCGCGTTTATTTACGCCTGCgg > 1:43607/1‑232 (MQ=255) nngccatgNNGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCAt < 2:14194/96‑1 (MQ=255) atgccatgATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCAt > 1:14194/1‑98 (MQ=255) gccatgATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTAtt > 1:75149/1‑71 (MQ=255) cnatgATTCGCCGGGCATTTTCGCTGGCGATNTATCATGCACATCAACGCCATGTNNGTNNNAANNTATTg < 2:245242/71‑1 (MQ=255) gcgcCGTGCATTTTTGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATGGc < 1:105653/105‑1 (MQ=255) ggCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTTCGTCTTGCGCGAGCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCtgtg < 1:266206/171‑1 (MQ=255) aTTTATCATGCACATCAACGCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTc < 1:52814/76‑1 (MQ=255) caTCAACTCCATGTTTTTGGTAATCTATTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATgg < 1:121575/70‑1 (MQ=255) gTTTTTGGTAATTTTTTGATCCAACAGTCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTGCGTCTTGCGCGAGCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCTGTGGGCGCGTTTATTTACGCCTGCGGCAAAATTTGTGATCTGCAAAAGAGGTATGCCGTTTGTGGCCGAAGCGATGGAGGTGCTGGGCGGCATTGGTTATTGCGAGGagag < 1:227031/251‑1 (MQ=255) | GGAGTTTCAGGATGCCATTGGTTGGTTGTTGGGGCTGGAAGGGGAAGGAATTCGTCTGATCCTGAAAATGGGTGGGATGACGCGTTTTGATTGCGCCCTGGGTAGCCATGCCATGATGCGCCGTGCATTTTCGCTGGCGATTTATCATGCACATCAACGCCATGTTTTTGGTAATCCATTGATCCAACAGCCCCTTATGCGTCATGTCTTAAGTCGCATGGCACTTCAGCTTGAAGGGCAAACGGCGTTGCTGTTTCGTCTTGCGCGAGCGTGGGACCGGCGTGCCGATGCCAAAGAAGCCCTGTGGGCGCGTTTATTTACGCCTGCGGCAAAATTTGTGATCTGCAAAAGAGGTATGCCGTTTGTGGCCGAAGCGATGGAGGTGCTGGGCGGCATTGGTTATTGCGAGGAGAG > NC_000913/4415087‑4415500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |