| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,223,217 | C→T | V138I (GTA→ATA) | iclR ← | DNA‑binding transcriptional repressor IclR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,223,217 | 0 | C | T | 84.6% | 16.1 / ‑2.7 | 14 | V138I (GTA→ATA) | iclR | DNA‑binding transcriptional repressor IclR |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (7/4); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
GTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAA‑GGCTTTACCCGCACCGGAAG‑CGTGCATCGGCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTG > NC_000913/4222993‑4223461 | ntCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAA‑GGCTTTACCCGCACCGGAAG‑CGTGCATCGGCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGAt > 1:201579/2‑251 (MQ=255) ttcttccgatctcgcgTTTGGGCGAGATCTTTTTTTAAATCCACATGAGACTCCAGCGTTGCGTGGGTAAAGCCAGGTACCCCTTTGCGTTGCGGCAGCTTCTTCCCTTTTTCTTCCCTAAGT‑GGGGTAAAAATGTCTTTCCCCGCACCGGAGG‑CGTGCATCGACAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGAt < 1:144876/238‑1 (MQ=255) gTTTGCGCGTTTGGGCGCGATCTTCTTTTAAATGCACCGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACACTTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAA‑GGCTTTAACCGCCCCGGAAG‑CGTGCATCGGCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTATCTGGCCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCAcc > 1:240979/1‑251 (MQ=255) tcggtcccttttcttccccgtggtGGGCAAAAAA‑AGTTTTACCCGCACCGGAAGGCGTG‑ACTGGCAATTTACCCGCCGATAGGCGCGGACATTCGCATCAGGTGCTTACACTTTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATAAAGCCCCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATGGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAgctgc < 1:27813/227‑1 (MQ=255) cNGTTGGGCTACAAC‑GGCTTTACCCGCACCGGAAG‑CGTGCATCGGCAATTAACC‑GCCGATAGGCGCGGACATTCGCCTCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGACGACCATAAAGGCAtgtg > 1:255013/1‑251 (MQ=255) gTTGGGATAAAAA‑GGCTTTACCCGCACCGGAAG‑CGTGCATCGGCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTgcg > 1:72545/1‑251 (MQ=255) tttcccaatttaaatttcccc‑gccgAGAGGCGCGGACATTCGCAGCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAAcc < 1:91387/231‑1 (MQ=255) cggtccttcgtaattttccc‑gccgATAGGCGCGGACATGCGCATCAGATGCGTACACTGTACCTGGTGAATAATAATCGCTTCGTGATCTCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCGTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTg < 1:182067/233‑1 (MQ=255) gCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTAACTGGTCGATAATACTCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGaa > 1:126301/1‑250 (MQ=255) ccgATAGGCGCGGACATTCGCATCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCCGGATCGGGTGAACAATCGCTAACAAATTACGGctc > 1:45084/1‑162 (MQ=255) gCATCAGATGCGTCCACTGTATCTGGTCGATAAAAATCTCTTCGTGACCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCgn < 1:194052/204‑2 (MQ=255) gCATCAGATGCGTACACTGTATCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAANTTANNNnnctnn > 2:194052/1‑144 (MQ=255) tACACTGTATCTGGTCGATCATACTAGCTTCGTGATCGCTTTGATCAAGCACCGCCAAATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTCACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGa > 1:99074/1‑250 (MQ=255) ccTGTATCTGGTCGATAATAATCGCTTCGTGATCGTTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTg < 1:298677/250‑1 (MQ=255) | GTCAAATGAATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTGCAGCAGCTTCGTCACCTGTTCTTCGCTCAGTTGGGCTAAAAA‑GGCTTTACCCGCACCGGAAG‑CGTGCATCGGCAATTTACC‑GCCGATAGGCGCGGACATTCGCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAGATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCAACCTGACGCACGAAACCCTGCTGTTGCATCGTGGTTAGCAGGCGGTGGGTCGTGGAATTG > NC_000913/4222993‑4223461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |