| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,933,540 | G→A | V64I (GTC→ATC) | rbsD → | D‑ribose pyranase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,933,540 | 0 | G | A | 88.9% | 14.3 / ‑5.1 | 9 | V64I (GTC→ATC) | rbsD | D‑ribose pyranase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (4/4); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
ATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGGTCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGG > NC_000913/3933373‑3933757 | aTTCTGATATGTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGATCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTg < 1:68771/251‑1 (MQ=255) gATGCTGGTTTACCCATCCCCAAAAGGACAACGCGTATCGATATGGCAGTAACCCAGGGTGTACCTTCTTTTATTCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGATCGAGTCGGGCATTATCGCGGAAGAGAGCAAACACCATAATCCCCAACTCCACGAAACGTTGCTCACGCAACTTGAGCAGCTGCAAAAACACCAggg < 1:236864/206‑1 (MQ=255) gATGCNNGTNNNCCNNTCCCCAAAAGGACAACGCGTATCNATATGGCATTAACCCAGCGTGTACCTTCTNTNANGCAGNNGCTNGGCGTCGTCANAAATGAAATGCAGATCGAGGCGGCCATTATCGCGGATGAGATAAAACANCNTAACTCGCAACTCCACGAAACGTTGATCACTNACCTTGAGCCGCTGCAAAAACACCNggggnntgng > 2:236864/1‑206 (MQ=255) ccAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGATCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCAc > 1:130309/1‑143 (MQ=255) cAGGGTGTACCTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGGTCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGGATGc > 1:3086/1‑251 (MQ=255) ccTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGATCGAGGCGGCCATTATCGCGGAAGGGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGCGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATAAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTACTTCg > 1:152875/1‑218 (MQ=255) naGGTGCTGGGCGTCGTCACAAATGAAATGCAGATCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTgg > 1:65204/2‑251 (MQ=255) gtcgtcACAAATGAAATGCAGATCGTGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCGCGAAACTTTGCTCATTCACCTTGagc < 1:276678/100‑1 (MQ=255) antgnaatgCNGATCNAGGCGGCCATTATCGNGGAAGAGAGCAAACACCAGNNTNCGCAANTCCAc < 2:130309/66‑1 (MQ=255) | ATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTGTGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAGGGTGTACCTTCTTTTATGCAGGTGCTGGGCGTCGTCACAAATGAAATGCAGGTCGAGGCGGCCATTATCGCGGAAGAGATCAAACACCATAATCCGCAACTCCACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGAACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCTGTGCTGG > NC_000913/3933373‑3933757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |