| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,895,120 | G→A | D157N (GAT→AAT) | yieF → | quinone reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,895,120 | 0 | G | A | 81.8% | 13.1 / 0.0 | 11 | D157N (GAT→AAT) | yieF | quinone reductase |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (4/5); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 | |||||||||||
ACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAC > NC_000913/3894905‑3895308 | actCGGTACCGGGTGGTGTTAAAAATGGCATCGACGGGTGTTCCCGCCTGCCGGATCAGCCGCTGGCCGGTAAGCCGGTATTGATTCAGACCAGCTCAATAGGCGTGATTGGCGGCGCGCGCTGTCAGTATGTGCTGCGCCAGATGCTTGTTTTCCTCGATGCAATGGATATGAACAGGCCTGAATTTATGTGGGGTGTGATTCAGAACAAAGTTAATCCGCAAGCCGGAGAAGTGATTGATCAGGGTACg < 1:139518/251‑1 (MQ=255) gCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCATTGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCg > 1:322344/1‑251 (MQ=255) ttctcattttCACCTGCGCCAGATTTTGGTTTTCCTCGGTGCACTGGTGATGAACAACACGTAATTTATGGGCGCGGTGTTCCAGAACAAATTTAACCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGAATTTGGTGATTTTATTCAGCTAGTTAAGATCTAAATAAAAACCCCGCCAGCCATCATGCATGTCCGGTTTTTAACGCGCTATCGATTTTAg < 1:26857/241‑1 (MQ=255) ncTCGATGCAATGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGAGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAc > 1:59692/2‑250 (MQ=255) gTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCCGAACAAAGTTGATACGCAAACCGGCGAAGTGATTGATCAgg > 1:128949/1‑79 (MQ=255) cAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCg < 1:260040/92‑1 (MQ=255) cNGANTTTATNGGCGNCGTGATTCAGAACAANGTTGATCCGCAAACCGGATNNGNGATTGNTCAgg < 2:128949/66‑1 (MQ=255) gTGATTCAGAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAAttn < 1:40339/78‑2 (MQ=255) aGAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGc > 1:133862/1‑96 (MQ=255) naaCAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAt > 1:205362/2‑105 (MQ=255) gAACAAAGTTAATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAt < 2:205362/105‑1 (MQ=255) | ACTCGGTACCGGGTGGGCTGAAAAATGCCATCGACTGGCTTTCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAC > NC_000913/3894905‑3895308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |