| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,871,025 | G→A | L236L (CTG→TTG) | dgoT ← | D‑galactonate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,871,025 | 0 | G | A | 84.6% | 24.0 / ‑2.5 | 13 | L236L (CTG→TTG) | dgoT | D‑galactonate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (6/5); total (7/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CAGTGAAAAGCCCTTACGTACCAGCAGATCCGCTACCCAGCCAGAGAGCAGGACGCCGACAAACGCCGCGAGGAATGGCACCGTGGTCATAAAGCCTGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAGTTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTGCTGATACCTTTGGTCAGGCGCGGCGGCTGATAAACCTTAAACCAAATCAGCGACCAGATAATGCCGATACCAC > NC_000913/3870801‑3871201 | cAGTGAAAAGCCCTTACGTACCAGCAGATCCGCTACCCAGCCAGAGAGCAGGACGCCGACAAACGCCGCGAGGAATGGCACCGTGGTCATAAAGCCTGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCt > 1:90659/1‑251 (MQ=255) agcagATCCGCTACCCAGCCAGAGAGCAGGACGCCGACAAACGCCGCGAGGAATGGCAACGTGGTCATAAAGCATGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAACAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGATGTTAACGGCTGCCGCGCCTCTTTCTTCACCgg > 1:239917/1‑251 (MQ=255) gagagCAGGACGCCGACAAACGCCGCGAGGAATGGCACCGTGGTCATAAAGCCTGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCGCTTTCTTCACCTGCGCATCACCATCCACCAGAcc < 1:117008/251‑1 (MQ=255) ggACGCCGACAAACGCCGCGAGGAATGGCACCGTGGTCATAAAGCCTGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAGTTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCgccgcc > 1:3236/1‑250 (MQ=255) gTCATAAAGCCNGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGNTNAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGNAAGTTGCCCANGATNNGCGCNGNTNAGTTTACGATGGAACGCCAGTTTCCAGTCNTTGTCTGTTAACGGCTGACGCACNnctnnntanncccgc < 2:240443/189‑9 (MQ=255) tCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTGTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTTCTGATACCTTTGGTCAGGCGCGGCGGCTGATAAAcc < 1:76890/250‑1 (MQ=255) ggTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTTTTAACGGCTGACGCGCCTCTTTCTTCAcc < 1:105662/124‑1 (MQ=255) ggTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTGCTGATACCTTTGGTCAGGCGCGGCGGCTGATAAACCTTAAACCAAATCAGCGACCAGATAATGCCGac > 1:18536/1‑248 (MQ=255) naaaaaCCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCa > 1:200216/2‑127 (MQ=255) gAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCa < 2:200216/127‑1 (MQ=255) gCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTGCTGATACCTTTGGTCAGGCGCGGCGGCTGATAAACCTTAAACCAAATCAGCGACCAGATAATGCCGATaccac > 1:897/1‑216 (MQ=255) naaGATAAACGCCGATCAGTTTACGATGGAACACCAATTTCCAg > 1:67156/2‑44 (MQ=255) ccGATCAGTGTACGATGGAACACCAATTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTGCTGATACCTTTGGTCAGGCGCGGCGGCt < 1:99296/157‑1 (MQ=255) | CAGTGAAAAGCCCTTACGTACCAGCAGATCCGCTACCCAGCCAGAGAGCAGGACGCCGACAAACGCCGCGAGGAATGGCACCGTGGTCATAAAGCCTGCTTTCAGCGCCGTGATTCCTTTTTCCTGGGTTAAATAGTTCGGGAACCAGGTTAAGAAAAACCACAGTGTAGAAGCCACCGCAAATTGCCCAAGATAAACGCCGATCAGTTTACGATGGAACACCAGTTTCCAGTCTTTGGCTGTTAACGGCTGACGCGCCTCTTTCTTCACCGGCGCATCACCATCCACCAGACCGCCGCCATCACGAATGTAATCCAGTTCAGCTTTGCTGATACCTTTGGTCAGGCGCGGCGGCTGATAAACCTTAAACCAAATCAGCGACCAGATAATGCCGATACCAC > NC_000913/3870801‑3871201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |