| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,857,408 | G→A | P333S (CCG→TCG) | yidJ ← | putative sulfatase/phosphatase YidJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,857,408 | 0 | G | A | 90.0% | 22.0 / ‑5.4 | 10 | P333S (CCG→TCG) | yidJ | putative sulfatase/phosphatase YidJ |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/5); minor base T (1/0); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGATCAGCGGAATGCGGGTGATGTCGTCATACATCGCCGCCCCTTTACTGATCAGCTTATGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCC > NC_000913/3857213‑3857618 | gacgtgggcgcttctgatctaGTTTAAAGTCATCCGTCACCCTGCAACGCCCCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATGCCACCATCACGCCGCGTGGCTCGTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATGTCTGCCAGCGCCATCATTGTCGACATTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTgcggc < 1:307421/231‑1 (MQ=255) gAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGAAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAAc > 1:100661/1‑251 (MQ=255) naCCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGTCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTACCCTTGCGGCGAACGGATGATCAGCGGAATGCGGGTGATGTCGTCATACATCGACGccc > 1:61458/2‑251 (MQ=255) cTGTCATGCTCAATCTCGTAGCGGTTAAATTCAACACTCAAGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCACCGGCCGAATCTCTGGTTTTTCAATCTCTGCCAGCGCCATCATTGTCGACAATAAATCGATATGCCTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGCTCAGCGGAATGCGGGTGATGTCGTCATACATCGCCGCACCTTTACTGATCAGCTTATGTgc > 1:211915/1‑251 (MQ=255) cGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTgc < 1:27255/156‑1 (MQ=255) cgccgcGTGGCTCTTTCACGGCAATGATATTTTCCCCCGGCAGAATCTCTGTTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCTCCGCTCCCCTTGCGGCGAACGGATGATCAGCGGAATGCGGGTGATGTCGTCATACATCGCCGCCCCTTTACTGATCAGCTTATGTGCGCCCATCATTTCGCCGTGATCTGAGGTATAAATAAc < 1:275418/247‑1 (MQ=255) ccgcGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTNCGGNNNNNggnnnnnnnnnn > 2:205756/1‑144 (MQ=255) tctGGTTTTTCAATATCTGCCAGCGCCTGTATTGTCGACAGTAAATCGATATGACGGACTGGCGTATCGACCTGTCGCCGCTCCCCTTgcggn < 1:33492/93‑2 (MQ=255) tctGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTNNGGCGaan > 2:6050/1‑96 (MQ=255) tctGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGACAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGATCAGCGGAATGCGGGTGATGTCGTCATACATCGCCGCCCCTTTACTGATCAGCTTATGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTcc < 1:6050/248‑1 (MQ=255) | TGGTGAAGAGGTTGAGTACCAGTTTAAAGTCATCCGTCACCCAGCAACGCACCGGAATAAAACCGCCAAAGCTGTCATGCTCAATCTCGTAGCGGTTAAATTCCACCATCACGCCGCGTGGCTCTTTCACGGCAAGGATATTTTCCCCCGGCAGAATCTCTGGTTTTTCAATATCTGCCAGCGCCATCATTGTCGGCAGTAAATCGATATGACTGACTGGCGTATCGACCTGTCGCCGCTCCCCTTGCGGCGAACGGATGATCAGCGGAATGCGGGTGATGTCGTCATACATCGCCGCCCCTTTACTGATCAGCTTATGTGCGCCCATCATTTCGCCGTGATCGGAGGTATAAATAACCCACGTATTTTCACGTTGCTCTGGCGTTAAGGCATTGATGACCCGTCC > NC_000913/3857213‑3857618 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |