| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,800,088 | G→A | P37S (CCT→TCT) | waaZ ← | lipopolysaccharide core biosynthesis protein WaaZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,800,088 | 0 | G | A | 93.8% | 35.7 / ‑3.5 | 16 | P37S (CCT→TCT) | waaZ | lipopolysaccharide core biosynthesis protein WaaZ |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (9/6); total (9/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
CTGGAGGATATAAAGTTTATCTTCTTTGGAAGCGTGTTCATAAACGTCAACGTTTACTATGGTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGGTGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGAT > NC_000913/3799864‑3800322 | cTGGAGGATATAAAGTTTATCTTCTTTGGAAGCGTGTTCATAAACGTCAACGTTTACTATGGTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCCCgaa > 1:159823/1‑250 (MQ=255) gAAGCGTGTTCATAAACGTCAACGTTTACTATGGTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAAGAATATCCTTTGTTCGTAATACTGACAAAGATTTTTTTTg < 1:115122/206‑1 (MQ=255) gtTCATAAACGTCAACGTTTACTATGGTATAACGACTTATCTGGCTAAATTTATAAAAATCATCACGACGATGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTc > 1:304830/1‑250 (MQ=255) gTTTACTATGGTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGc < 1:102633/184‑1 (MQ=255) gTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCACTAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCACgaaag > 1:119285/1‑191 (MQ=255) aCTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCAGTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGTTTTTCAACATCTTTTTTGTCAATGTATc < 1:268023/251‑1 (MQ=255) aaaTTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTGTTGCGATGTAGGTCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATAttcttc < 1:55749/250‑1 (MQ=255) catcaCGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTCTTACTTAACAGATATTGCGCAGAAACATTGACAGCAATAATATCCTTTGTTCGTAATCCTGACAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTc > 1:281857/1‑202 (MQ=255) cGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACt > 1:115046/1‑251 (MQ=255) naGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGt > 1:94471/2‑251 (MQ=255) naGAACCATTGACAGCAATANTANNCTTTGTNCGTAATACTGACAAAGATGTTTTTTg < 2:74306/57‑1 (MQ=255) cAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTg > 1:74306/1‑58 (MQ=255) cAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGATGTTTTTTTCGATGTAGGTCCCGAAAGAAAAATAATAACATCATCAGATATTGTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTgg < 1:243165/200‑1 (MQ=255) cagtattacgaaCAAAGGTGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGTTGGTTTCCCTTTCAAGCGCTGCATAAAATTGCGCATTTTTTTACg < 1:99742/239‑1 (MQ=255) cGTAATACTGCCAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTCTTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATATAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGat > 1:224629/1‑251 (MQ=255) cAAAGATGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAAc > 1:117203/1‑149 (MQ=255) | CTGGAGGATATAAAGTTTATCTTCTTTGGAAGCGTGTTCATAAACGTCAACGTTTACTATGGTATAACGACTTCTCTGGCTAAATTTATAAAAATCATCACGACGCTGATGTAAAAATCGGACATCTGTAAGTACATATATAAAAGGAACGATATTATTACTTAACAGATATTGCGCAGAACCATTGACAGCAATAATATCCTTTGTTCGTAATACTGACAAAGGTGTTTTTTGCGATGTAGGGCCCGAAAGAAAAATAATAACATCATCAGATATTTTATTTTCAATCAGGTTTTCAACATCTTTTTTGTCAATGTATCTAATATTCTTCATGATAAACCTGTGAAATAAATAACTCCGCTTAAAACTGTCCTGGTGAAGACATGTAATTGTGGGATTTTTTTTAGCGCGCTGGTTTCCCTTTCAAACGCCGCATAAAATTGCGCATTTTTTTACGAT > NC_000913/3799864‑3800322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |