| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,758,201 | G→A | A554V (GCC→GTC) | selB ← | selenocysteyl‑tRNA‑specific translation elongation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,758,201 | 0 | G | A | 81.2% | 19.3 / 3.2 | 16 | A554V (GCC→GTC) | selB | selenocysteyl‑tRNA‑specific translation elongation factor |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (5/8); total (7/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.54e-01 | |||||||||||
AATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGGAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGCTCTTCGCTGAAGCCCGCTTTGTGATCTGGCAGATG > NC_000913/3757965‑3758427 | aaTTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTACACGACGACGAGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATc > 1:308212/1‑251 (MQ=255) gAAATAAGAATGCGGCGCGCAATAAATGATCATTTCCACTACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCTAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAACCCGCCGCGCAGGTTGAACCACACTCCTGATCGCGATCGCGGATCATATGGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTTCGCCGCCTgg < 1:77023/251‑1 (MQ=255) cgcAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAggn < 1:204471/247‑2 (MQ=255) cgacgCGTAAAGCCAATGCGGTCAAAATATGCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACGCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGtc < 1:246555/249‑1 (MQ=255) cccgCCACTGCGGGCAACATATTCCAGAATCTGAATTGCCAGCTGTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGNCAANNNNNTc > 2:192844/4‑144 (MQ=255) aaaGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATAGTGACAAACTCGACAATCCTATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTGGCTGCGCCGTCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGcc < 1:159835/250‑1 (MQ=255) gAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTTCCAGGTCACGCACCCACCACGGTTCGTCACCAAAc < 1:127281/251‑1 (MQ=255) gCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAg > 1:155346/1‑192 (MQ=255) aTCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGAGCGTTACGGGAATAACGATCTTTAACGATCGCGGTAATTATTCCGTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTg < 1:143657/162‑1 (MQ=255) cgcgAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGCCAATCCGATCGTTACGGTCATAACGATATTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCtgctgc > 1:101488/1‑251 (MQ=255) gAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGCTCGCGGATCATATTGGCAAAc > 1:184995/1‑61 (MQ=255) cgcgCAGGTTGAACCACACTCCTTATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTGAACGATCGCGGTAATTATCCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTGTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGCTCTTCGCTGAAGc < 1:181842/251‑1 (MQ=255) gcgcAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCg > 1:4195/1‑54 (MQ=255) gcgcAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCg < 2:4195/54‑1 (MQ=255) ccACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGCTCTTCGCTGAAGCCCGCTTTGTGAtn < 1:65818/251‑2 (MQ=255) tGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGATCTGCTTTTTGCCAGATGGCCTGCTGCTCTTCGCTGAAGCCCGCTTTGTGATCTGGCAGATg > 1:18064/1‑251 (MQ=255) | AATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGGAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGCTCTTCGCTGAAGCCCGCTTTGTGATCTGGCAGATG > NC_000913/3757965‑3758427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |