| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 11 [0] | [0] 10 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 10 (0.810) | 9/274 | 0.2 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||
ACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTG > NC_000913/2565280‑2565718 | ccggattattgcggatgtccgctacggtcatttccgacaacacctgctttgccgccacgcgctcctgtgagcttgccgctgcgaagcccgccagcacatcccccgcacgcagttcgttggctttagccagcacctcttttacatcctttaactgatatacattgccgaacaatgtggtctttagtttcatacgtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGc > 1:314479‑M2/210‑251 (MQ=255) gcggatggtcgctacgtgcattgccgacaacaccgtcttggccgccacgcgctcctgtgagcttgcagctgctacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcatctcttttacatccttaaactgatatacattgccgaacaatgtggtctgtagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCATCGGCACAACCGATCCGCCAAAaagagn < 1:57671‑M2/52‑2 (MQ=255) cgcgctcctgtgagcttgccgctgcgacgcccgccagcacatcccccgaaagcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGatat > 1:242938‑M2/153‑221 (MQ=255) cttgccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagacagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGACAAAAaga > 1:290265‑M2/139‑188 (MQ=255) ccgctgcgacgcccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:90727‑M2/135‑165 (MQ=255) ccgccagcacatcccccgaacgcagttcgttggctttagccagcacctcttacatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:217852‑M2/121‑136 (MQ=255) gctttatccagcacctcttttacatccttaaactgatataaattgccgaacactgaggtctttagtttcataagtcgttcactcaggaagGACATGCGAGAGATTTCACCGTCACCGGCCCAACCGATACGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACCATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGca > 1:51094‑M2/91‑225 (MQ=255) tagccagcacctcttttacatccttaatcttatatacattgccgaacaatgtggtctttagtttcataagtcgtgccctcaggaagGAAATGCGAGTGATGTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAAGTTCGATATAGTCCCCCGCGCGGACGATCACTTCGTCAATTACTGCCAACGGGAGTTGTTGTAGCGATGGGCGCAACAGCATGCCCAGAGCTTTACCAAAGTcc < 1:234964‑M2/164‑1 (MQ=255) acatccttaaactgatatacattgccgaacaatgtggtctttagtttcataagtcgttccctcagaaagGAAATGCGAGTGATTTCACCGTCAAGGGCACAACCCATCCCCCAAAAAGCGGCGTACCAATGTCGATCTAGTCCCCAGCGCGGACAATCACTTCGTCAATGACTGCCAACGGCAGTTGTTGTAGCtgtg > 1:298249‑M2/70‑198 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCACTGTCGATATAGTCCCCCGCGCGGCCAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGTAGTGGGCGCAACAACATGCCCAGCGCTTTACCCAAGTCCTGCCCGGCCACCACCCGCGGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTtg > 1:143880‑M2/22‑251 (MQ=255) | ACAAGCTGATAACTTTGCTTCCCAACTGGATTGATAAGCTGGGAGACGAATAAACCAGCCTTCAACCCCATCTCATCAATCAACGCCCGGCCCCGCTGCCGGGTTTTTGCTATGCACCACAATTACCCCAACCGGATACACAGCCGGATACAATTCCACCAGCACCCAGCCACCCAGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACCGATCCGCCAAAAAGAGGCGTACCAATGTCGATATAGTCCCCCGCGCGGACAATCACTTCGTCAATGACTGCCAACGGGAGTTGTTGTAGCTGTGGGCGCAACAACATGCCCAGAGCTTTACCAAAGTCCTGCCCGGCCACCACCAGCAGGGGATGCGGATTCGGAAAACGCGCGACGAAATCGACCAACGCGTTG > NC_000913/2565280‑2565718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |