| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 10 (0.770) | 9/288 | 0.2 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2406787 | 0 (0.000) | intergenic (‑146/‑774) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 15 (1.150) | 11/290 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2406780 = | 0 (0.000) | intergenic (‑139/‑781) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
GCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAG > NC_000913/2406580‑2406992 | gagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagccgagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtccgtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGtt > 1:210713‑M2/201‑226 (MQ=255) nccncttntnngnnctcngtgagagcagagatagcactgnngtccggcggnccttttgccgttacgccccaccccgtcagtagctgaacaggagggacagctganagaaacagannccnctggancnnntnnnaanctccatcatacactaaatcngtnngttggcngcataaccAAAAAAGCGACTCACAtt < 2:74636‑M2/18‑1 (MQ=255) ccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccacgggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:190088‑M2/39‑1 (MQ=255) cagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACAtt > 1:74636‑M2/160‑177 (MQ=255) tttGCACTTATCATATATTATCACTTACTGGCGGCTCATACCGAGCTGGTTAAAGATGTGCCCACACCAACAAGCAATTCCATTTGTAAAGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctacaccgattttgagaacgacagc < 1:180731‑M2/251‑92 (MQ=255) ngcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTAt > 1:84666‑M2/153‑251 (MQ=255) tATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCAGTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttc > 1:231136‑M2/1‑152 (MQ=255) aTCATATATTATCACTTACTGGCGGCACATACTGATCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgtttagttcagataatgcccgatgagtttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcc < 1:90552‑M2/251‑101 (MQ=255) gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAGCTTCAGGGATCGCATAGCTATTAAGTTACTCACTCTGTTCTATTTATGACATGcgcg < 1:215645‑M2/113‑1 (MQ=255) cTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCGTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttacgttcagataatgccctatgactttgtcatgcagctccaccgattttgagaacgacagcgacttcc > 1:321886‑M2/1‑137 (MQ=255) ncttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg > 1:205356‑M2/125‑188 (MQ=255) caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc > 1:279563‑M2/1‑94 (MQ=255) caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgata < 1:100892‑M2/118‑25 (MQ=255) nngannnnngatngaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatccccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 2:205356‑M2/64‑1 (MQ=255) caaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGGTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccan > 1:67595‑M2/1‑90 (MQ=255) ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgtctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgagttggagaacgacagcgacttccgtcccagccgtgc > 1:249687‑M2/1‑77 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGt > 1:10559‑M2/68‑251 (MQ=255) cttgagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTc > 1:234063‑M2/57‑78 (MQ=255) ctcaaacacaccctcatacactaaatcagtaagttggcagcatcaccAAACAAGCGACTCCCATTGTTCCGTTATAATGc > 1:54320‑M2/48‑80 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAACAAAGCGCATCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc > 1:318760‑M2/47‑142 (MQ=255) aCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatac < 1:175313‑M2/249‑206 (MQ=255) tggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat > 1:6569‑M2/14‑67 (MQ=255) tggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 2:6569‑M2/54‑1 (MQ=255) caccAAAAAAGCGACTCACATTGATCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATAACTATTAAGTTACTCACTCTTTTCTATTTATGACATGCTCGTTTTTGGATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTgg < 1:319481‑M2/168‑1 (MQ=255) cACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgtgcagataatgccccatggctttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc > 1:313360‑M2/1‑12 (MQ=255) | GCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAG > NC_000913/2406580‑2406992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |