New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	17 (1.310)	14/290	0.0	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 1978494	0 (0.000)					intergenic (‑297/+24)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

AGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA  >  NC_000913/1978296‑1978738                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     aGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAAGGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcg                                                                                                                                                                                                                                    >  1:13549‑M2/1‑199 (MQ=255)                cAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTTATGCAGATCACACAAAACCCTCAATTACTTAAggaaggggcgaataatcgtggaaattcttctcggctgactcagtcatttcagttcttcatgtttgag                                                                                                                                                                                   >  1:210745‑M2/1‑184 (MQ=255)                                       gTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATTCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctgcatgtttgagc                                                                                                                                                                                  >  1:322143‑M2/1‑161 (MQ=255)                                                             gAAAGGGGTCTTTACACTTATCTAAGAGTTTTCCTAAAGCGACGCAACTGTACGCGTCACTACACGCACAGACAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgc                                                                                                                                                                                                                                             >  1:295710‑M2/1‑139 (MQ=255)                                                                        ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgc                                                                                                                            >  1:174884‑M2/1‑128 (MQ=255)                                                                             nttaTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattt                                                                                                                       <  1:192307‑M2/249‑128 (MQ=255)                                                                                             ccgaaatcgACGCAACTGTACTCGGCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcagttcatttcgtcatgtttgag                                                                                                                                                                                   >  1:103705‑M2/4‑107 (MQ=255)                                                                                                     gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGCGACACAGATCACACAAAACACTCAATTACTTCAggaaggtgcgaataagcggggaaatacttctcgactgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtg                                                                                              <  1:301640‑M2/251‑153 (MQ=255)                                                                                                       cGCAACTGGACTCGGCACGACACGCACATACAACGGAGTGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACCTAAggaaggtgcgaataagctgggaaattcttctcggctgactcagtcgtttcatgtcgtcatgtttgaggcgaggttttctcccgtaaatgccttgaatcatcctgtttagaccggttcttcgccatttaaggcgttatccccagtttttagtgag                                                                                            >  1:166920‑M2/1‑97 (MQ=255)                                                                                                                       aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaagaagcggggaaattcttctcggctgactcagtcagttcatggcttcatgtgtgagccgattttttctcccgtaaatgccttgaatcagcctatttagac                                                                                                                                       >  1:310865‑M2/1‑81 (MQ=255)                                                                                                                          nnacgcACNNACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggg                                                                                                                                                                                                                                  >  2:23264‑M2/3‑78 (MQ=255)                                                                                                                             cGCACATACGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattctgctcggctgactcagtcatttcagttcttcatgtttgagccgatttgttctctcgtaaatgccttgaatcagcctatttagtgcgtttcttcgtcatttaaggcgtgattcccagtgtttagtgagatctctcccactgacgtatcat                                                                      >  1:292258‑M2/1‑75 (MQ=255)                                                                                                                                          ggggggggctGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccg                                                          <  1:313851‑M2/248‑189 (MQ=255)                                                                                                                                                     cGATTTTCAATAATTCGTGATGCAGATCTCACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                                                                                                                        >  1:301643‑M2/1‑51 (MQ=255)                                                                                                                                                                aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcg                                                                                                                 <  1:110348‑M2/173‑134 (MQ=255)                                                                                                                                                                           cAGATCACACAACACACTCAATTACTTAAggaaggtgcgaataagcggggacattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttctttgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgcc                           <  1:319349‑M2/248‑220 (MQ=255)                                                                                                                                                                                                   cTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattgcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttgcttcgccatttaaggcgtgatccccagtttgtagtgagatctctcccactgacgtatcattgggtccgcccgaaacaggttggccagcgggaataacatcgccagttggttatcgtttttcagcaacc  >  1:308707‑M2/1‑5 (MQ=255)                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     AGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCA  >  NC_000913/1978296‑1978738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.