| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 7 (0.540) | 6/290 | 0.5 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2666074 = | 0 (0.000) | coding (640/1281 nt) | csiE | stationary phase‑inducible protein CsiE | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 21 (1.620) | 18/288 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2666082 | 0 (0.000) | coding (648/1281 nt) | csiE | stationary phase‑inducible protein CsiE | |||||
CCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCC > NC_000913/2665844‑2666301 | cccGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCGGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgc > 1:74941‑M2/1‑239 (MQ=255) ggCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaactt < 1:4249‑M2/250‑18 (MQ=255) gccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCg < 1:12794‑M2/17‑1 (MQ=255) tgaagggaaagctgcacgtaatcagcaagcgatatacgcagagaattgagcggcataccctgactctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:132118‑M2/192‑250 (MQ=255) ttGCTGCAGCACCACGCTGGAATTCCGCCTCAGGTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCAGCTGATGAGCCACTGTGTATGGCACTACTTTTTACCtgtgatgctgtcaacttactgatttagtgtatgatggtgtctttgaggtgctccagtggcttctgtttctatcagctgt > 1:149902‑M2/1‑171 (MQ=255) tgctgcAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTGTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc > 1:73543‑M2/1‑170 (MQ=255) tgcAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGATCCACTGTTGATGGCTCTACTTTTTTCCgttgatgctgccaacttactgatttagtgtatgatggtggttttgaggtgctc > 1:210174‑M2/1‑167 (MQ=255) cagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtttgaggcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCAGTTTCg < 1:265939‑M2/98‑1 (MQ=255) cTGGAATTACGCCTCAGTTTAATCCGATCCACCGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTCGCGCAGCAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactga < 1:279236‑M2/177‑23 (MQ=255) ggAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGTGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACTCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc > 1:97388‑M2/1‑153 (MQ=255) nctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacagaca > 1:67325‑M2/116‑174 (MQ=255) ttGAATTTNANNNANNGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGNACCACCTGATGAGCCNCTNTTTANGGCNCTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 2:223728‑M2/149‑49 (MQ=255) ttGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTGTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 1:223728‑M2/1‑101 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGtt > 1:8813‑M2/64‑177 (MQ=255) gCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCTCCTGATGAGCCACTGTTTATGGCACTACTTTTTTGCggtgatgctgccaacttactggtttagtgtaggatggttgttgtgagttgctccagtggcttctgtttctatcagctgtccctgctgttcagctactgacggggtggtgcgtaacggcaaaagcac > 1:47155‑M2/1‑71 (MQ=255) gCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagctctatctctgctctcactgccgtaaaacatggcaactgc < 1:102170‑M2/250‑180 (MQ=255) ccACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGCTTATGGCAATACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatagtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttaagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatg < 1:246722‑M2/241‑172 (MQ=255) caaagtcatcgggcattatatgaacataaaacactatcaatcagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGCTGCGCATCAGCGGGACAGACAAt > 1:120910‑M2/59‑119 (MQ=255) gCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:14131‑M2/1‑61 (MQ=255) gcTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt < 1:10506‑M2/131‑80 (MQ=255) ntcCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatc < 1:194294‑M2/187‑138 (MQ=255) cTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTCTTTCCggtgatgctgccaacttactgatgtagtgtatgatggtgtttttgaggtgctccagtggcttc > 1:207464‑M2/1‑51 (MQ=255) cTGTACCACCTGATGAGCCACTGTTTNTGGCACNNCTNTTTTCCggtgatgctgccanctnnntnnntncgtgtntgnnggagtttttnaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac < 2:75138‑M2/140‑97 (MQ=255) cTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac > 1:75138‑M2/1‑44 (MQ=255) actGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactnacgnnnnngtnnnnnnnnnn < 2:195872‑M2/153‑119 (MQ=255) atcaataagttggagtcagtaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTGTCGTGAGCTGGGAAATGTTCGGTTTTATGATGAACAGGGGTTATGGGATCAGCTTTATACCCACCTCGCCCATTCGTTAAATCTCAGTTTGTGTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGcc < 1:209941‑M2/228‑1 (MQ=255) gCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctc > 1:187471‑M2/1‑28 (MQ=255) tnNTGGCACNNCTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt > 2:10506‑M2/1‑20 (MQ=255) cATGTTGCGGGTTCCCGATCCATTGCNGGANGCGCNTCNGCGGGACAGACAATTNCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGNNANNNTNGTTTTTat < 2:228161/115‑1 (MQ=255) cATGTTGCGGGTTCCCGATCAATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTat > 1:228161/1‑115 (MQ=255) | CCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCC > NC_000913/2665844‑2666301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |