| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4123923 = | 0 (0.000) | 18 (1.390) | 14/288 | 0.0 | 100% | coding (534/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4123927 | 0 (0.000) | 11 (0.850) | 8/288 | 0.3 | 100% | coding (530/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGAT > NC_000913/4123678‑4124164 | gcttacgccagagaaataacttgctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatctgttcctgtgtggtacgccgtctgcttttctccggccctaatacatcaatcatctgttcttcaatgactagtctaaaaactagtagtaagactatcactgatttaagtgatattggttgtctggagattcagggggccagtctaataat > 1:183914‑M1/246‑250 (MQ=255) gcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCCAGCAGCTGCTGCATCGCTTTGCTTCCAGCTTCGAAGGGGAAGTCGCCCCGGGCCGTGTATTGCGGATCAACCATAATGCCGCAGCGACGCCGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATACCTTCGGGACCGGCTATACAGCCAAACCGTTTATGCCCTTGCTCATATCAAAAATtgg > 1:181335‑M1/1‑248 (MQ=255) ataactggctggctgctacaccatgttgccgggcaacgagggagaccggcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatataagtgatattggttgtctggagattcagggggccagtctaAGAATTTACTGCATCAAATgc > 1:274293‑M1/231‑251 (MQ=255) gctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTc < 1:108643‑M1/28‑1 (MQ=255) ctgctacaccatgttgccgggcatcgagggagaccgtcatccccgtttcaaagctctggttaacaattgcgatcttttcctgtgtggtacgccttctgcgtttctccagccctaagacatcaatcatctgttgtccaatgactagtctaaaaactagtattaaggctatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAAt > 1:302387‑M1/219‑237 (MQ=255) gaagaCAGCAGTAGGCGGTTTTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGATGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCAATACAGCCAAACCGTTTATCCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctg < 1:290395‑M1/251‑31 (MQ=255) ccgggcaacgagggcgaccgtcatcccaggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGt < 1:256714‑M1/48‑1 (MQ=255) gcaacgagggagacagtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggcactaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGc < 1:225353‑M1/52‑1 (MQ=255) ccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgcgtggtacgacgtcagcgtttctccggccctacgacatcaatcatctgttctccaatgactcgtctcaaaactagtattaagactatcacttatttaagtgatattgggtgtctggagattcagggggcccgtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGtcgtt < 1:137530‑M1/39‑3 (MQ=255) aagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtagtaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGc > 1:278066‑M1/169‑220 (MQ=255) ccGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaan < 1:202574‑M1/218‑53 (MQ=255) gTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagctataacccagcg < 1:113249‑M1/243‑95 (MQ=255) gtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCAtcgn > 1:193606‑M1/138‑229 (MQ=255) ncgATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattac > 1:201941‑M1/2‑139 (MQ=255) ncgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTg < 1:203822‑M1/121‑1 (MQ=255) gtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTAc > 1:86401‑M1/126‑134 (MQ=255) gtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATGTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAAttcg > 1:272242‑M1/126‑201 (MQ=255) ccgtccctaagacatcaatcatctgttctccaatgacttggctaaaaactattattaagactatcacttatttaagtgatattggttgtctggagattcagggggccaggctaATAATTTACTGCATCATATGCGGCGGTCAGATTGTCGATATGAACTTTAGTCAGCGTCAGCTCCGGTGCAAATTCGTTCGCCATTACCATCGGCGTCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAg > 1:229290‑M1/114‑248 (MQ=255) nnnnnnctnnnnnTAGNCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattac < 2:201941‑M1/144‑50 (MQ=255) ntctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGcagctcca < 1:85716‑M1/59‑1 (MQ=255) cGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtgg > 1:297511‑M1/1‑76 (MQ=255) gTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATttgatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaac > 1:124378‑M1/1‑74 (MQ=255) ntagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagcctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAgg < 1:29887‑M1/51‑1 (MQ=255) ctagtattaagactatcacgtagttaagtgatattggttggctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTc > 1:162218‑M1/66‑93 (MQ=255) cGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaac > 1:274122‑M1/1‑51 (MQ=255) aaataagggatattggttgtctggagagtcaggaggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCACCTCCAGCACCGGTTCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTg > 1:169473‑M1/45‑165 (MQ=255) nctATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcc > 1:38527‑M1/2‑43 (MQ=255) tGCCCTTGCTCATATAAATAATtggatttgcccctataattacagacatttgctatcaattcacctattacaagcccgctgccgcagatattcccgtcgcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgcacgcctctgccaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgcagctctctgctattccgt > 1:309366‑M1/1‑22 (MQ=255) ccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATTATGGCATCAAACGGCAGCCTTGAACCCCGCAACAAAATGCCATCAATTTGCTTGGTGATGATCAAAACGGAAAAGGTTTTTTCCTTCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAgaa < 1:26525‑M1/242‑2 (MQ=255) | GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGAT > NC_000913/4123678‑4124164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |