| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 21 (1.620) | 18/288 | 0.0 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 14 (1.080) | 13/290 | 0.1 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACG > NC_000913/2269636‑2270100 | ttCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaagg < 1:279568‑M1/250‑7 (MQ=255) aCGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCGGTATCACTTTTTCTTATAAAAAATCAGGTAAAACCGCTCGCCAAGATCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCTGTAGATGATCCTCACAGCATATAATTTTGTGCGTGAGTCCACAGATTTGGCCTTAggaatgtgcgaacaagtcc < 1:237013‑M1/251‑20 (MQ=255) aaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGc > 1:90607‑M1/228‑250 (MQ=255) cAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaaca > 1:287300‑M1/1‑229 (MQ=255) gcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataccgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACg < 1:108296‑M1/65‑1 (MQ=255) agagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCTCAGGTAATTAGTCGCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAggg > 1:180966‑M1/161‑251 (MQ=255) aCCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc < 1:20430‑M1/251‑90 (MQ=255) tGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATACTTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa > 1:150262‑M1/1‑116 (MQ=255) ctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgacatgactgcgtcagccgagacgaatttccccgcttattcgaaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTgcgc < 1:237946‑M1/142‑1 (MQ=255) ctaaataggctgattcaaggcagttacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAAc > 1:150689‑M1/110‑128 (MQ=255) aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCggg < 1:120777‑M1/145‑1 (MQ=255) ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACt > 1:115205‑M1/92‑175 (MQ=255) atgtacgggagaaaaaatcggcgcaaacatgaataaatgaaatgactgattcagccgagaagaatttccccgctgattcgcacctgccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAg > 1:208108‑M1/89‑123 (MQ=255) gTAATCTCGAACTCGTTTTGCCTCGGCGGGAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCGCAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagttcatgttggtcatcttgagccatagaacagggtgctgcatgagtcatcaactgaccttcgccgacagtgaagtcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccat < 1:302528‑M1/251‑169 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAAtt < 1:9779‑M1/33‑1 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTg < 1:135900‑M1/158‑1 (MQ=255) cGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatgcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggc < 1:322198‑M1/247‑172 (MQ=255) ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTgc < 1:7026‑M1/140‑1 (MQ=255) ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCCGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAg < 1:102313‑M1/80‑1 (MQ=255) ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGt < 1:126128‑M1/184‑1 (MQ=255) nnaacatgnngaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAAtt > 2:9779‑M1/66‑98 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagacgaatttccccgcttattcgcaccttccCTTACGGACTTGTTTCAACATGCCCAGGTCATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCtt < 1:126075‑M1/175‑1 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGaaa < 1:268393‑M1/94‑1 (MQ=255) ttttGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaagg < 1:45439‑M1/74‑7 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTa < 1:299943‑M1/78‑1 (MQ=255) cacaGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgcgatcctgtttgtcatctggagccatagaacagggtttatcatgagtcatcaacttcccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggag > 1:289270‑M1/1‑43 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATc < 1:4030‑M1/216‑1 (MQ=255) ataATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccatagaacagggttcatcatga < 1:112020‑M1/107‑73 (MQ=255) aatttcgccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACg > 1:184741‑M1/27‑251 (MQ=255) aatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGTGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGTTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACg > 1:42570‑M1/27‑251 (MQ=255) tgCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgctatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag > 1:175703‑M1/1‑26 (MQ=255) gTTAGTCAACAGATTTGGCCTTAagaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactta > 1:272298‑M1/1‑23 (MQ=255) cacaNATNTGGCCTTAggaaggtncgaacaagtccctgatatgagatcatgtttgtcatctggagccanngnnnanggttcatc < 2:231254‑M1/84‑69 (MQ=255) cacaGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcaatagaacagggttcatc > 1:231254‑M1/1‑16 (MQ=255) gcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTc > 1:164309‑M1/10‑179 (MQ=255) | TTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTT‑ATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACG > NC_000913/2269636‑2270100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |