| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 14 (1.080) | 8/288 | 0.3 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 0 (0.000) | 6 (0.460) | 5/290 | 0.7 | 100% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
AGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAA > NC_000913/1105186‑1105619 | ngagaccgtcatccccggttcaaagctctgctgaacagttgcgatcttttcctgtgtggtacgccgtctgcgtttctccgaccctaagacatcaatcatctgttatccactgactagtctaaaaactagtattcagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGa > 1:35611‑M2/191‑218 (MQ=255) atcttttcctgtgtggtacgtcgtatgcgtgtctccggccctaagacatcattcatctgttctccaatgactagtctaaaaactagtattaagactatcacttattgaagtgatattggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAAGAAATGTTCAGAc < 1:220500‑M2/48‑1 (MQ=255) ggACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggagagcgataacccagcgcactatgcagatgcc > 1:20197‑M1/1‑141 (MQ=255) aTCACAACAATGGCCGCCATCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgctaacccagcgcactatgcggatgccaatcgttataatgctcg > 1:271728‑M1/1‑124 (MQ=255) cggccctaagacatcaatcatctgttctccaatgactagcctaaaaactagtattacgactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCAttttt > 1:214383‑M2/113‑250 (MQ=255) ccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATgg < 1:172357‑M2/142‑1 (MQ=255) catcaatcatctgttctccaatgactagtctaaaaactagtatgaagactatctcttatttaagtgatattgggtgtctggagagtcagggggccaggctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTcan < 1:63705‑M2/46‑2 (MQ=255) ttcatctgttctccaatgactagtctcaaaactagtattaagaatatcaattatttcagtgatattggttatctggagcttgagggggccaggctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGAACTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACAGAGCAAGGGGGCGTGATACATTTTTATGGCCAAATTGTGGa > 1:154712‑M2/97‑250 (MQ=255) catctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAacn < 1:203395‑M2/157‑2 (MQ=255) catctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAAc < 1:48289‑M2/156‑1 (MQ=255) gTCTTAATTGGTTGAAATATCGAGCATAAGATGAATCGGGAGAGAATGGTCTGCTGCGAAGCAGCCAACCTGAAAGTATGGATAACAAAACCCTtggatttgcccctatattgccagacatctgtgatcacttaacccagtacaagcccgctgccgcagatattcccggggcgagcgataacccatcgcactaggcgtatgccattcgttataatgctcgaacgcctctgcaaggn < 1:65077‑M1/236‑143 (MQ=255) actatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTAATCACCCGTAGAAAt > 1:19571‑M2/55‑250 (MQ=255) gctgcGAATCAGCCAACCTGAACGTATGGATAACACAACACTtggatttgcccctatatttccagagatctgttatcccttaaaccattacaagcccgctgccgcagctattcgcgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgcc > 1:294414‑M1/1‑42 (MQ=255) gcGAATCAGCCAACCTGAAAGGAGGGAGAACACAACCCTtggattggcccctatattgccagacatctgttatcactgaacccattacaagcccgttgccgcagatattcccgtggcgagcgataacccagcgcactatgcggat < 1:180167‑M1/145‑107 (MQ=255) gtctggagattcagggggccagtctaACCCGCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCgg < 1:76154‑M2/225‑1 (MQ=255) ccAACCTGAAAGTATGGATAACTCAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaag < 1:20631‑M1/243‑214 (MQ=255) gagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTAAGACATTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGACGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCACAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCAGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCaa > 1:150557‑M2/22‑250 (MQ=255) ggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAg > 1:160876‑M2/11‑119 (MQ=255) ntctaACCCTCAAGGATGACTACTCATTGCGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCGCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCaa > 1:94703‑M2/6‑249 (MQ=255) cTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAAc < 1:181893/197‑1 (MQ=255) | AGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAA > NC_000913/1105186‑1105619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |