| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 12 [0] | [0] 12 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 12 (0.980) | 10/274 | 0.2 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
TCGAAAAACGCTTGTGTTAAAAATTTGCTAAA‑TTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAC‑CGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGC > NC_000913/257752‑258122 | tCNAAAAACGCTTTGGTTAAAAATTTGCTAAAGTTTTG‑CAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAC‑CGAGTGGACACCCGAAGAGCANATTNATCANAANATTTACCGCACTAGGNCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttnnannntntggctgta < 2:223306‑M1/197‑42 (MQ=255)tCNAAAAACGCTTGTGTTAAAAATTTGCGAAA‑TTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAC‑CGAGTGGACACCCGAAGAGCANATTNATCANAANATTTACCGCACTAGGNCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttnnannntngtgctgta < 2:223300‑M1/197‑42 (MQ=255)tCGAAAAACGCTTGTGTTAAAAATTTGCTAAA‑TTTTGCCAATTTGGTAAAACAGTTGCCTCACAACACGAGATAGCAATGAC‑ATACACGAGTGGAAACACGAAGAGCAGATCGATAAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta > 1:223300‑M1/1‑156 (MQ=255) cATCACAACAGGAGATAGCAATGACGTTAC‑CGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgggggatggagctggaag > 1:222259‑M1/1‑99 (MQ=255) ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcttgaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcg < 1:238818‑M1/226‑163 (MQ=255) cccGAAGAGCAGATTGATCAAAAAATTTACAGCAATAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactg > 1:258657‑M1/1‑59 (MQ=255) gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagcgcaaagataatcgattctttttcgattgtctggctgtatgcgt > 1:243238‑M1/1‑48 (MQ=255) ttatcAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtctggctgtaggcgtcaacgtgaaaccggcaccggaagtgcgggaattctggggctggtggatggagctggaatcgcaggaatcccgttttacctacagttaccagtttggtctgttcgataaagcaggcgac < 1:227118‑M1/207‑165 (MQ=255) cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcaaagataatcgattctttttagattgtctggctgtgtgcgtcaacgtgaaaccagccccggaagtgcgtgaattctggggctggtggatggcgctggaagcgcaggaatcccgttttacctccagttaccagtttggtctgttcgataaagcaggcgactggaagagtgttccgg > 1:247577‑M1/1‑41 (MQ=255) naaaaatTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc > 1:203117‑M1/2‑40 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc < 2:203117‑M1/126‑87 (MQ=255) aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgggagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtgtggtctgttcgataaagcaggcgactggaagagtgttccggtaaaagacactgaagtggttgaacgactggagcac < 1:323994‑M1/251‑216 (MQ=255) | TCGAAAAACGCTTGTGTTAAAAATTTGCTAAA‑TTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAC‑CGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGC > NC_000913/257752‑258122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |