| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,146,389 | 1 | . | T | 88.9% | 18.9 / ‑2.7 | 9 | coding (132/879 nt) | pflC | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (8/0); total (9/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01 | |||||||||||
GGAAGCGCAACAGCGCCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TT‑AAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAAATCCAGACGGTACGCAGAGAGGCGAAATGTCTGCACTGTGCGAAATGTTTGCGTGATGCGGATGAATGCCCCTCCGGGGCGTTTGAACGGATTGGTCGCGATATCAGCCTTGACGCTCTGGAACGGGAAGTGATG > NC_000913/4146163‑4146581 | ggAAGCGCAACAGCGCCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAACCGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTg > 1:44149/1‑236 (MQ=255) ncacaAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACCGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGGCCGTGGTGTGCTAATCCg > 1:61138/2‑251 (MQ=255) ccGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCAAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCACCATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAAATCCAGACGGTACGc > 1:281166/1‑250 (MQ=255) aTCCAGGATGACATCATCCGCCGGACAGCGCATCACCTATAACGTTGTGGCAACGCGCCGCGCTGATGTGGCGCGCATTTTAAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAAATCCAGACGGTACGCAGAGAGGCGAAATGTCTGCACTGTGCGAAATGTTTGCGt > 1:126582/1‑251 (MQ=255) gATGACATCATCCGCCGGACAGCGCATCAGCAGTAAGGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTAAGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGAAAAATCCAGACGGTACGCAGAGAGGCGGAATGTCTGCACTGTGCGCAATGTCTGCGTGATGCg > 1:128954/1‑251 (MQ=255) gACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGCAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCgg > 1:129303/1‑184 (MQ=255) cgccgcGATGATGTGGCGCGCATTTTCAAAATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TTTAAAGGCTGTCCGCATCTTTGCCCGTGGAGTGCTAATCCGGAGTCGATCTCCGGCAAAATCCAg > 1:98257/1‑148 (MQ=255) aaCATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGCCTTTT‑TTTACAGACTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCACCATCCCGACGGTACGCAGAGAGGCGCAATGTCTGCACTGTGCGAAATGTTTGCGTGATGCGGATGAATGCCCCTCCGGGACGTTTGAACCGATTGGTCGCGGTATCAGCCTTGACGCTCTGGAACGGGAAGtgatg > 1:294282/1‑250 (MQ=255) ntGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTTATT‑ACCGGCTGTCCGCATCTTTGCCCGTGGCGTGCTAATCCGGAGTCGCTCTACCGCAAAATcc > 1:62560/2‑101 (MQ=255) | GGAAGCGCAACAGCGCCCACAAGATTATGCCGGGCTGGTGGTGCGCGTTGCCGGATACAGCGCCTTCTTTGTCGAACTGTCGAAGGAGATCCAGGATGACATCATCCGCCGGACAGCGCATCAGCTGTAACGTTGTGGAAACGCGCCGCGATGATGTGGCGCGCATTTTCAACATTCAGCGTTATTCACTGAATGACGGCGAGGGCATTCGTACGGTGGTCTTTT‑TT‑AAAGGCTGTCCGCATCTTTGCCCGTGGTGTGCTAATCCGGAGTCGATCTCCGGCAAAATCCAGACGGTACGCAGAGAGGCGAAATGTCTGCACTGTGCGAAATGTTTGCGTGATGCGGATGAATGCCCCTCCGGGGCGTTTGAACGGATTGGTCGCGATATCAGCCTTGACGCTCTGGAACGGGAAGTGATG > NC_000913/4146163‑4146581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |