| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,744,751 | 0 | C | . | 100.0% | 62.0 / NA | 17 | coding (1295/1374 nt) | mdtK | multidrug efflux pump MdtK |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (6/11); total (6/11) | |||||||||||
AGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTC > NC_000913/1744550‑1744963 | ataTTTCGGACTCAATCCTGGTTATTTGCAGTTGGATTTTGCGTGGATATAAAGATACGCGTTCCATTATCTATATTATCTTTACGTTTTACTGTGTGCTTGGCTTTCCAAGCGTCTATATTCTGGCTGTTTCCGAGCTGTTCGTTTAACCTGTGGTGCCTGTATGCGTCTTTATATGCATTAGTATGTGCCTGACGGCGG‑AGCCATTAAGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAg < 1:223228/249‑1 (MQ=255) aTTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAAc < 1:154210/216‑1 (MQ=255) gCGTGGTTATAAAGATGCGCGTTCCATTTTCTATAGTCCCTTTTCGGCGTCCTGGGTGCTGGGCTTGCCAAGCGGCTATAGGCGGGCACTGTCCGATCTGGTCGGTGAACCGATGGTGCCAGCAGGCGTCTGTATATTCTTTATGATTCGCCGGACGCCGG‑AGCCATTAGGATGATTTTGCGTAGGCTGTTCCGGATTCGCCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCGAATAATGACAAgg < 1:244165/251‑1 (MQ=255) cGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGAGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTc > 1:321341/1‑201 (MQ=255) gTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTCCTGGGTGCTGAGATTGCCAAGCGGCTATCTTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGTCTGACGACGG‑GGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGgcg > 1:318898/1‑251 (MQ=255) cgcgTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCGGGCACTGACCGATGTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGtt < 1:155398/251‑1 (MQ=255) atTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTTCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACg < 1:209438/251‑1 (MQ=255) ncGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGt > 1:29008/2‑112 (MQ=255) ggTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACaga < 1:124819/248‑1 (MQ=255) ccTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTatcatgatg > 1:134669/1‑68 (MQ=255) ccTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACATCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTgg < 1:156987/251‑1 (MQ=255) ntATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTAAGATGATGTTCCGTATGCGGATCCTGCAACGTCTGCCGTCAGACATCATTCTGCAACGCGCCTCCCGCTAATAAAGACAAGGCGCACCCTTCACGGGTTGCGCCTGTATTTTTACGCCGGCTGGAGCGTTGCGCCAATACCGTCTTCGTCTGGCTGTAATTTCag > 1:32448/2‑224 (MQ=255) nccAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAAc > 1:193543/2‑109 (MQ=255) gCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGGCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCGGCCGTCAGCCATCATGCTGCAAc < 2:193543/109‑1 (MQ=255) cagcagGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTGGCGTATGGGGTTCCTGCTACGGCTGCCTGCAGCCATCATTCGGCATCTATCTTCCCGCTAAGAAAGACTAGGGGCTTCCGTCATGGGTGGCTCCTTTATGTTTACGCATGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAAt < 1:303293/210‑1 (MQ=255) agcagGCTTCTGGATAGGCTGTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGTGTTGCGCTTGTATTTTTACGCAGGCTGGTGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATGTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTAtc < 1:159458/251‑1 (MQ=255) cagGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGG‑AGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATTCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTTGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGTCTGGCATCTGTTAtctc < 1:266815/251‑1 (MQ=255) | AGATTTCTGACTCAATCCAGGTGATTGGCAGTGGGATTTTGCGTGGTTATAAAGATACGCGTTCCATTTTCTATATTACCTTTACGGCTTACTGGGTGCTGGGCTTGCCAAGCGGCTATATTCTGGCACTGACCGATCTGGTCGTTGAACCTATGGGGCCAGCAGGCTTCTGGATAGGCTTTATTATTGGCCTGACGTCGGCAGCCATTATGATGATGTTGCGTATGCGGTTCCTGCAACGTCTGCCGTCAGCCATCATTCTGCAACGAGCATCCCGCTAATAAAGACAAGGCGCAACCTTCACGGGTTGCGCCTGTATTTTTACGCAGGCTGGAGCGTTGCGCCAATCCCGTCTTCGTCTGGCTGTAATTTCAGAGCGTTACACAGAGTTTGCCGACTGGCATCTGTTATCTC > NC_000913/1744550‑1744963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |