| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 6 (0.600) | 5/320 | 0.4 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 0 (0.000) | 11 (1.100) | 8/322 | 0.1 | 100% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACC > NC_000913/1467683‑1468158 | gtagCAGGTTACTTCCTTGCGCACAGGATATAGTTATAACAGCGTTATTGTCGTTAGGGGGGGGGGGTCGGTATCTCTGAATGGAGATACGACGATCCGCGGAGAATTCCCTCTGGGTTTTGCCGGGGCTATTCGAGACCAGGGTGATGATTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTGTTGGACATCATGGGACAAGAACACTGAATTTACGCCTATATTTcc > 1:93831/4‑248 (MQ=255) nttACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGGGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTACAGACATATGt > 1:19108/2‑251 (MQ=255) taCCAGCGTTATTGTCGTTAGTGGTGAAGCGGCGGTATATCTGAATGGAGATACGACAATCAGTGGAGAATTACCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGTAAAAGCTTTTCTGGAAATTGGCAGGGGCGCTACCCTAACAATGCCGGGTATTGACAGTTTTGAACATCATGGGAAAAGAAACCTTGATTTGCCCCTATATTTCCAGACATCTGTTTTTACTTTACCCCTTACAAGCCCGCTGc > 1:5251/1‑251 (MQ=255) gAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGAAGAATTCCCCCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGATTTACTGGACATTGGCAGTGGCGCTCCGCTAACTATGCAGGATCTTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGttgc > 1:35214/1‑241 (MQ=38) aGTCGTCGGTATATCTGAATGGATATACGACAAGCAGCGGAGAATTCCCTCTGTGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTGGCTGGAAATTGATATGGGTGCTACTCTAACATTGCAGGTTATGGTCTGGTGTGAACATTATGGAACAAGATCCCTGGATTTGCCTCTATATTTCCAGACGTCTGTTTTTACTTAACCCATTACCAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCtata < 1:213441/251‑1 (MQ=19) gtcgGTATATCTGAATGGAGATACGACAATCAGCGGAGCATTACCTCTGGCGCTTGCCAGGGCAATTAGGGTACCGGATCAACCTTTGCTGGAAATTGGAAGTGGCGAAACGCTCACAATGCAAGATCTTGACAGTTTTGAACATCCTGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATc > 1:30273/1‑189 (MQ=255) agaTACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGATGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGc > 1:1892/1‑251 (MQ=255) tGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTc < 1:172786/236‑1 (MQ=255) aCATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAAcc > 1:4956/1‑180 (MQ=255) ggACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGCTAACCCAGCGCACTATGCGGATGCCATTCGTtata > 1:196124/1‑131 (MQ=255) ccTGGATTTGCCCCTATATTTCCAGACATCTGGTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATGCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGAGGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGGAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCAcn < 1:38412/251‑2 (MQ=2) | GTCGCAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACTCCGCACC > NC_000913/1467683‑1468158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |