| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,712,731 | C→T | intergenic (+573/‑38) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,712,731 | 0 | C | T | 88.9% | 15.5 / ‑6.0 | 9 | intergenic (+573/‑38) | nth/dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (2/6); total (3/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAA‑TTTAACGCTGGATAACATTTCCCGGAATG‑GTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTCAATCACCCTTTTCTCTTCC > NC_000913/1712524‑1712963 | gtgcagtgAAAAAATCTGCCGTTACGTTTTTTGAAAAA‑TTTAACGCTGGATAACATTTCCCGGAATG‑GTTGAATTCACCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGAGCAAGATAGTGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGTACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTcc > 1:211888/1‑251 (MQ=255) gCCGTTA‑GTTTTTTAAAAAAATTTAACGCTGGATAAATTTTCCCGGAATG‑GTTGAATCCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGTTCCCCCGTTAATATGGGATGTAAAAAAAGAGTTAAAAGTGTCCACTGCaaaccaaaaac < 1:122681/250‑1 (MQ=255) gaaCGCAGGAAAACATTTCCCGAAATGTGTT‑AATTCCCCGCCAAAGTAATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTACAAGATAGTGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTGTTTTATACATAACGCTAGAAAGTACCCCCGTTAATATGGGATGTAAAAAAAGAGTTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAAc < 1:130424/249‑1 (MQ=255) gATAGGGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGTACCCCCGTTAATATg < 1:320654/93‑1 (MQ=255) aTTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGTACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTGTGAACGCGGTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTGATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGt < 1:312494/251‑1 (MQ=255) gCCGTTTCCCCTCCCCCTATAACACTTGCGCGTATGTTTTTTATACATCACGCGAGACAGCACCCCCGTTAATATGGGCTGTCAAAAAAGAGGTCAAAGTGTCCACTGCAAACCAACAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTTaaca > 1:310471/1‑250 (MQ=255) tGCGCGTATGTTTTTTATACATAACGCGAGAAAGTACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAACCCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGATTTATGGGAACGTTATGGTTATGACGGc < 1:258595/189‑1 (MQ=255) ataCATAACGCGAGAAAGTACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCGCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTGTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTCAATCACCCTTTTCTCTTcc < 1:142631/251‑1 (MQ=255) cgcgAGAAAGTACACCCGTTAATATGGGCTGTCAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGtttt > 1:98065/1‑153 (MQ=255) | GTGCAGTGAAAAAATCTGCCGTTACGTTTTTTGAAAAA‑TTTAACGCTGGATAACATTTCCCGGAATG‑GTTGAATTCCCCGCCTCAGTTATATGTAACAGATTATTACAAAGGACTTGTCTGAAAGTGCAAGATAGTGAACATTACCTGCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAGTGTCCACTGCAAACCAAAAACCAACTGAAAGCGTCAGTTTGAACGCTTTCAAACAACCGAAGGCGTTCTATCTCATCTTCTCGATTGAGTTATGGGAACGTTTTGGTTATTACGGCCTACAAGGAATTATGGCTGTTTACCTGGTTAAACAACTGGGTATGTCTGAAGCGGATTCAATCACCCTTTTCTCTTCC > NC_000913/1712524‑1712963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |