| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,698,593 | G→A | T196T (ACC→ACT) | malI ← | DNA‑binding transcriptional repressor MalI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,698,593 | 0 | G | A | 88.9% | 14.0 / ‑5.1 | 9 | T196T (ACC→ACT) | malI | DNA‑binding transcriptional repressor MalI |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/3); minor base C (1/0); total (6/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
GCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTA > NC_000913/1698434‑1698807 | gCAAACCACGGCACTGATGGTCGGGTTATGACGTACACGCGCCGTGATAGCTTCCGCGGCTTGATTCTGGCTGGAAGCGCACTCCAACACCCAATCGCTATCAAACGGCAGGCAAAATTTTAGTAGAGTTGCACAATCGCCCCCAACCCGTTCTGCACGCGTTAATg > 1:286642/1‑167 (MQ=255) aaaCCACGGCACTGATGGTCGGGTTATGCCGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTg > 1:107297/1‑175 (MQ=255) ttATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGAGGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCgn < 1:36044/233‑2 (MQ=255) cgcCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCCCTATGAAACGGAAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTGCCCTCCCCGCCAGGCGATCCGCTGATGCCCCTTGCGCATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTgg > 1:133959/1‑251 (MQ=255) aaCACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTGCCCTCCCAGCAAGGCGATCCGCTGATGCCCATTGCGAATGAGCTGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCg > 1:280496/1‑251 (MQ=255) gAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTaa > 1:250768/1‑64 (MQ=255) aCGGCAGGCCAAATTTTAGTAGAGTTNCACAATNNCCNCCAACCCGTTCTGCACGAGNTANNNANNNANTTTGCNCTNNCAGCCAGGCNATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGNATGTTGTc > 2:76546/1‑151 (MQ=255) aCGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTc < 1:76546/151‑1 (MQ=255) aTAGCCCCCAACCCGTTCTGCACGAGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTTCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCGTCGCATGTCATCGCTACGTCCTGCAGCTCCGGCAATTa < 1:108618/239‑1 (MQ=255) | GCAAACCACGGCACTGATGGTCGGGTTATGACGTAAAAGCGCCGTGATAGCTTCCGCGGCTTGCTTCTGGCTGGAAGTGCACTCCAACACCCAATCGCTATGAAACGGCAGGCCAAATTTTAGTAGAGTTGCACAATAGCCCCCAACCCGTTCTGCACGGGTTAATGAGGAACTTTGCCCTCCCAGCCAGGCGATCCGCTGATGCCCATTGCGAATGAGATGCTCCGTCAACAACTGTGCAGCCTGCATGTTGTCCGGGCGAACCGTATCAACATCATCAAGATAACTGGCACGGGAAGCGAAAATCACCGGGATAGCTTTTTCTTCTGCCATCCGTCGCAGGTCATCGCTACTTCCTGCAGCTCCGGCAATTA > NC_000913/1698434‑1698807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |