| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 154,417 | G→A | S337F (TCC→TTC) | htrE ← | putative fimbrial usher protein HtrE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 154,417 | 0 | G | A | 100.0% | 40.7 / NA | 17 | S337F (TCC→TTC) | htrE | putative fimbrial usher protein HtrE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (8/9); total (8/9) | |||||||||||
GAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGTAATAGTGACTTTGGCGTTGGTATTGGCAACGCCATGAATGATAGGCGCAAAGCTGGCTAAAGTCGGA > NC_000913/154174‑154596 | gAAGTATTCAGACCAAGACCTAACAAACCAGCGGAATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGACGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCATGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTACAACGACAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAAttcttc > 1:108500/1‑251 (MQ=255) ggTATAACCAGTCAGATAGTTATTCAGGCCGTAGTCGTAGCTTGCTTGAAATAAATTAGGCTCATACTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAAAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAgcgc > 1:260705/1‑251 (MQ=255) aaCCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAACTTAGGCTCATCCTGAATATCATCTTTTAAGACCTGCCCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGACCAACGGATGAGCAAGGCTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTggc > 1:332200/1‑251 (MQ=255) gATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAg > 1:181852/1‑234 (MQ=255) nttgAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGt > 1:94303/2‑250 (MQ=255) gtcttttcctatctggCTCATCCTAAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGt < 1:258141/236‑1 (MQ=255) cttgAAATAAATTAGGCTCATCCTGACTATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGCTGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGCCGACAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGt > 1:131909/1‑250 (MQ=255) aaatTAGGCTCATCCTAAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCg < 1:152887/156‑1 (MQ=255) tGACCGCCGCTCATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGCAAGGTTGCGACAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCAGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGTAATAGTGACTTTGGCGTTGGTATTGGCAACGCCATGAATGATAgg > 1:210499/1‑251 (MQ=255) ncAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGa > 1:201551/2‑137 (MQ=255) ccANCGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAGCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGa < 2:201551/137‑1 (MQ=255) ccAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGGTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGat < 1:128227/128‑1 (MQ=255) cGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGTACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGTAATAGTGACTGTGGCGTTGGTATTGGCAACGCCATGAATGATAGGCGCAAAGCTGGCTAAAGTCgg < 1:229602/251‑1 (MQ=255) gTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTAGAGCCACCTTGCGTAATAGTTACTTTGGCGTTGGTATTGGCAACGCCATGAATGATAGGCGCAAAGCTGGCTAAAGTCGGa < 1:223749/251‑1 (MQ=255) tGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGcn < 1:79825/80‑2 (MQ=255) caacGGATGAGAAAGGTTGCGAGAATGTCCTCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGTCACCTTGCGTAATAGTGACTTTGGCGTTGGTATTGGCAACGCCATGAATGATAGGCGCAAAGCTgn < 1:60059/213‑2 (MQ=255) cGAGAATGTCCGCTTTGAGCCATCGAATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGTAATAGTGACTTTGGCg < 1:175642/154‑1 (MQ=255) | GAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGATTCTTCGATGGTAACAATAAGATCGCTGCCGTACCCTGACGGACTCAGATCATCAATGACGAAAGCGCCTGGCGGCACCGTCGTTTCATAAATCTTATAGCCACCTTGCGTAATAGTGACTTTGGCGTTGGTATTGGCAACGCCATGAATGATAGGCGCAAAGCTGGCTAAAGTCGGA > NC_000913/154174‑154596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |