| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,542,990 | C→T | intergenic (+357/‑125) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,542,990 | 0 | C | T | 90.0% | 20.7 / ‑5.9 | 10 | intergenic (+357/‑125) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (3/6); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
AAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAA‑ATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGG > NC_000913/4542755‑4543203 | aaaaGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGGTTCATc < 1:70756/251‑1 (MQ=255) atatGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGGGAAAACtgtgn < 1:60390/251‑2 (MQ=255) ttCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAAGAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:101793/250‑1 (MQ=255) cTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGATTGTACGCGACACTTTCCTCTATACGTCACTATG‑CTCCAACATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAATCAAACTCGTTTACTAAACAAAGTGTACAGAACGACTGCCCCTGTAGATTTAGAAATAGTTTTTTGAAAGGAAAGCACCATGAAAATCAAAACTATGGCAATCGTTGTTCTGTCGGc > 1:319910/1‑251 (MQ=255) ataaataaAGATAACTATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTT‑GAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGc < 1:263836/248‑1 (MQ=255) caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTc > 1:9993/1‑231 (MQ=255) aTAAACTGAAAAAGTTTGTCCGAGATGCTTTCCTCTATGAGTCAAAATGGTCCCAT‑ATGTTTCATCGTTTGGGGGAAAACTGTGCATTGTGGGCAGTCAAACTCGTTTATAAAATAAAGTGTACATAACGACTGCCCATGTCTATTTAGAAATATTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAGCTGTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCa < 1:214411/251‑1 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGCGAACACTGCGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAAtgg > 1:148804/1‑251 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGTCCCAA‑ATGTTTCATCTTTTGGGGGACAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAACGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGt > 1:128114/1‑203 (MQ=255) nttnCCTNTNNGNNTCANAATGGTCCCAA‑ATGTTTCATCNNTTGGGGGAANACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGANTGCCCATGTNNATNTAGAANTNNNTNNNTGNAAGGAAAGCAGCATGAAAANTANNACTCTGNCAATCGTTGTTCTGTCGGCTCTGTcc < 2:76858/192‑1 (MQ=255) | AAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAA‑ATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAATCGTTGTTCTGTCGGCTCTGTCCCTCAGTTCTACAGCGGCTCTGGCCGCTGCCACGACGGTTAATGG > NC_000913/4542755‑4543203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |