| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,540,522 | C→T | intergenic (‑1021/‑435) | nanC ← / → fimB | N‑acetylneuraminate outer membrane channel/Type 1 fimbriae regulatory protein FimB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,540,522 | 0 | C | T | 91.3% | 60.5 / ‑4.5 | 23 | intergenic (‑1021/‑435) | nanC/fimB | N‑acetylneuraminate outer membrane channel/Type 1 fimbriae regulatory protein FimB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/7); minor base G (0/2); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
TAGTTTGTTTGCCGTATCGCCCGGCGAATGGCTGTGATTGAGGAAGGTTTAAGTCGTAGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGCCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGTTATTATTAGATTCGTATCC > NC_000913/4540306‑4540728 | tAGTTTGTTTGCCGTATCGCCCGGCGAATGGCTGTGATTGAGGAAGGTTTAAGTCGTAGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGc < 1:27214/249‑1 (MQ=255) gCCGTATCGCCCGGCGAATGGCTGTGATTGAGGAAGGTTTAAGTCGTAGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATg < 1:101056/232‑1 (MQ=255) ccGGCGAATGGCTGTGATTGAGGAAGGTTTAAGTCGTCGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGCATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTg > 1:144114/1‑251 (MQ=255) gTTTAAGTCGTAGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGATCCACCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGc > 1:290969/1‑203 (MQ=255) gTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGa > 1:258394/1‑250 (MQ=255) tataTTGACCAACGAAGGTAGATTAAAAACTCATCTCCTGCGTTCCCCCACATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGATGACGAATCATCAGCAATAATCGCTAGCGACCTAAGAATTAGCATGATAATAGTCACTCAGAAATGACTGCCCTCCCTGAAATAGACTTTTTGTTACTCAGTTAGTTGACTACTAATGTCATATGTGAGACGGc < 1:279274/228‑1 (MQ=255) naTGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACggt > 1:96977/2‑207 (MQ=255) aaTCATCTCCTGCGTTCCCCCATATCTCTATGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGGATTAGCATGATAATAGGCACTAAGAAATTACGGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAAGGTCAGATGTGAGACGACTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTg < 1:329568/251‑1 (MQ=255) tcCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGCCGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGtt > 1:182979/1‑233 (MQ=255) nccccATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACt > 1:85700/2‑161 (MQ=255) cccccATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGGCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGcn < 1:33708/185‑2 (MQ=255) tAAAAAGGNANNNANNAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGNGCCCTAAGATTTAGCNTGNTAATNGTANCTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATAtg > 2:227658/1‑158 (MQ=255) tAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTATCATGATAATAGTCACTAAGAAATTACTGCGCGCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATAtg < 1:227658/158‑1 (MQ=255) aaaaGGCATGTAACACTCTCATGGCGTAAGCTGACGACTCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGAtt > 1:75819/1‑251 (MQ=255) cATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAgg > 1:274591/1‑251 (MQ=255) cGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTCAGAATTAGCATGCTAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGACATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGttat > 1:185693/1‑251 (MQ=255) aaGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCAt > 1:137038/1‑82 (MQ=255) ntGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAAtttt > 1:81309/2‑168 (MQ=255) cGAATCAGCGGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTg < 1:329166/158‑1 (MQ=255) cGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGTTATTATTAGAttn < 1:30526/251‑2 (MQ=255) agcagGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGTTATTATTAGATTCGTATcc > 1:13546/1‑251 (MQ=255) nanGANTAATCNCTAGNGACCTAAGAATTAGCNTGATAATAGTCACTAAGAANNTNCTGCTNTCCAt < 2:137038/66‑1 (MQ=255) aGCATGATAATAGTCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTAt > 1:324541/1‑131 (MQ=255) | TAGTTTGTTTGCCGTATCGCCCGGCGAATGGCTGTGATTGAGGAAGGTTTAAGTCGTAGTGACCAAAGCTATATTTACCAACGAATGTAGATGAAAAAATCATCTCCTGCGTTCCCCCATATCTCTAGGATAAAAAGGAATGTAACAATCTCATGGCGTAAGCTGACGAATCAGCAGGAATAATCGCTAGGGACCTAAGAATTAGCATGATAATAGCCACTAAGAAATTACTGCGCTCCATGAAATAGCCATTTTGTGGCAAATGGAGTTGACTAATAATGTCATATGTGAGACGGCTAGTTGAACGAATATTAAATTTTGCTGAATTTTTTATGTTGATTTTACTTGTTACAGAACATATCACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGTTATTATTAGATTCGTATCC > NC_000913/4540306‑4540728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |