| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,430,615 | C→T | S251F (TCC→TTC) | cycA → | D‑serine/alanine/glycine/:H(+)symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,430,615 | 0 | C | T | 95.0% | 56.1 / NA | 20 | S251F (TCC→TTC) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (11/8); minor base G (0/1); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GTCGCCATTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTCCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTG > NC_000913/4430371‑4430853 | gtcgCCATTGTGGCGCTGATTGTCTTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGGCATTCGCGCATTTGTGGAATGACGTCGGCTGGTTCCCGAAAGGTTTAATTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTGCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTGCATTcc < 1:247354/251‑1 (MQ=255) ccTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGGCATTCGCGCATTTGTTGAATGACGGCGGCTGGTTCCCGATAGGTTTAAGTGGCTTCTTTGCCGTATTCCATATAGCGGTTTTCGCTTTCGTTGGGATTGAGCTTGTAGGTACAACAGCTGCGTAAACCAAATATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGt < 1:303246/239‑1 (MQ=255) aTGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCGCTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTcg < 1:46512/235‑1 (MQ=255) cggcgcatGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTAGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAAACAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt > 1:75072/8‑251 (MQ=255) ncggcTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGt > 1:65531/2‑249 (MQ=255) ccGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGTTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTGCGCGCGGAGTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGc < 1:167302/222‑1 (MQ=255) gCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAACTCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGc > 1:211390/1‑250 (MQ=255) ncAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTcc > 1:192372/2‑179 (MQ=255) cAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCACGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTAGCGCTGATTGTGTTTACGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTtgt > 1:316362/1‑251 (MQ=255) gaggTTTTCGCTTTCGTGGGGATTGANCTGGTANNTANAACAGCTGCGGAAACCAAANATNNNGNNNANTCACTNCCNNGCGCGATTANCTTCATTCCGATCCGTCTCATTATGTTCTACGTCTTCGCGCTGATTGTGATTANGTCCGTGACNNCGTGGAGTTCGGTAGTCCCGGNGAANNGNNCNTttntt > 2:69802/3‑192 (MQ=255) nnnnnnnnnntGNNNNNTACNACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTcc < 2:192372/144‑1 (MQ=255) acaacaGCTGCGGAAACCAAAGATCCAGAGAAATCACTGTCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGc > 1:25164/1‑147 (MQ=255) aGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCAACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGGGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTctct > 1:256150/1‑250 (MQ=255) ggAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGCTTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGACAAGCCCGTTTGTTGAATTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGcc > 1:316231/1‑251 (MQ=255) ggAAACCAAAGATCCAGAGAAATCACCGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCAGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGcc > 1:142856/1‑251 (MQ=255) cAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATNc < 1:255153/251‑1 (MQ=255) gcgcgATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGtgtg < 1:43137/251‑1 (MQ=255) gcgATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGTCGTCTTCTCTACCAGCCGTATTCTGTGTGGTCt < 1:259229/233‑1 (MQ=255) cgATTAACTTCNTTCCGATCCGTATCATTATGTTCTACGtn > 2:43388/1‑40 (MQ=255) cgATTAACTTCATTCCGATCCGTATCATTATGTTCTACGTc < 1:43388/41‑1 (MQ=255) | GTCGCCATTGTGTCGCTGATTGTCGTCGGCCTGGTCATGGTGGCGATGCACTTTCAGTCACCGACTGGTGTGGAAGCGTCATTCGCGCATTTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTTTAAGTGGCTTCTTTGCCGGATTCCAGATAGCGGTTTTCGCTTTCGTGGGGATTGAGCTGGTAGGTACAACAGCTGCGGAAACCAAAGATCCAGAGAAATCACTGCCACGCGCGATTAACTCCATTCCGATCCGTATCATTATGTTCTACGTCTTCGCGCTGATTGTGATTATGTCCGTGACGCCGTGGAGTTCGGTAGTCCCGGAGAAAAGCCCGTTTGTTGAACTGTTCGTGTTGGTAGGGCTGCCTGCTGCCGCAAGCGTGATCAACTTTGTGGTGCTGACCTCTGCGGCGTCTTCCGCTAACAGCGGCGTCTTCTCTACCAGCCGTATGCTGTTTGGTCTGGCGCAGGAAGGTGTG > NC_000913/4430371‑4430853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |