| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,408,700 | C→T | R683C (CGC→TGC) | rnr → | RNase R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,408,700 | 0 | C | T | 90.0% | 18.8 / ‑3.5 | 10 | R683C (CGC→TGC) | rnr | RNase R |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (5/4); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
GTTCGATGGCGGAACGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCGACCAGGTAGGTAACGTCTTTAAAGGCGTAATTTCCAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATCGACTTTAGCCTGATCTCCAGCGAACGCGCACCGCGCAACGTCGGTAAAACGGCGCGCGAGAAAGCGAAAAAAGGCGATGCAGGTAAAAAAGGC > NC_000913/4408500‑4408906 | gTTCGATGGCGGAACGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCGACCAGGTAGGTAACGTCTTTAAAGGCGTAATTTCCAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGan < 1:67429/250‑2 (MQ=255) gtGCCGACGAAGCAACGCGCGCTGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCGCCCAGGTAGGTACCGTCTTTAAAGGCGTAATTTCACGCGTCACTGGCTTTGGATTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGCCAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCg > 1:316804/1‑246 (MQ=255) aaGCAACGCGCGATGTGGCTGACTGGATGAAGTGTGACTTCATGCTCGACCAGGTAGGAAACGTCTTTAGAGGAGTAATTTACAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGCAGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACATATCGACTGGGCGATCGCGTGGAAGtt > 1:314893/1‑251 (MQ=255) cAACGCGCGATGTGGCTGACTCGCTGAAGTGTGACTTCATGCTCGACCAGGCAGGTAACGTCTCTAAAGGCGTAATTTCCAACGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTg > 1:287925/1‑197 (MQ=255) cTCGACCAGGTAGGTAACGTCTTTAAAGGCGTAATTTCCAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGAc > 1:138337/1‑138 (MQ=255) ggtaACGTCTTTAAAGGCGTAATTTCCAGCGTCACTGGATTTGGCTTCTTCGTCCGTCTGGCCGACTTGTCCATTGATGGTCTGGACCATATCTATTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGCCGAAGCGGTTAATATGGCCGAGCGCACAATCGACTTTAGCCTGATCTcc > 1:296407/1‑249 (MQ=255) ttAAAGGCGTAATTTCCAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATCGACTTTAGCCTGATCTCCAGCGAAcgcgn < 1:61031/250‑2 (MQ=255) cGTCACTGGCTTTGGCTTCTTCGCCCGTCTGGACGAATTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATTGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTcgc > 1:104241/1‑169 (MQ=255) ngncgncTTGTNCATTNATGGTCTGGTCCATGNCTCTTCGCGGGACAATGACNNCNATTGCNTTGAc < 2:138337/66‑1 (MQ=255) tGATGGTCGTGTCCATGTCTCTGCGCTGGACAATGACTACTATTGCTTTGACCAGGGAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCTCCGGGGCGATCGCGTGGAAGTTCTCGTCGAAGCGGTTAATATGGACGAGCTCAAAATCGACTTTAGCCTGAGCTCCAGCGAACGCTCACCGCGCAACGTCGGTAAAACGGCCCGCGAGAAAGCGAAAAAAGGCGATGCAGGTAAAAAAggn < 1:33505/250‑2 (MQ=255) | GTTCGATGGCGGAACGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTCGACCAGGTAGGTAACGTCTTTAAAGGCGTAATTTCCAGCGTCACTGGCTTTGGCTTCTTCGTCCGTCTGGACGACTTGTTCATTGATGGTCTGGTCCATGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTAGGGCAACGCCTGATGGGGGAATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATCGACTTTAGCCTGATCTCCAGCGAACGCGCACCGCGCAACGTCGGTAAAACGGCGCGCGAGAAAGCGAAAAAAGGCGATGCAGGTAAAAAAGGC > NC_000913/4408500‑4408906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |