| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,408,175 | C→T | L508L (CTG→TTG) | rnr → | RNase R |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,408,175 | 0 | C | T | 96.0% | 64.6 / NA | 25 | L508L (CTG→TTG) | rnr | RNase R |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (15/9); minor base G (0/1); total (15/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGAGCGAAGAAGCGAAGTTCATTTTCAACGCTGAACGCCGTATTGAACGTATCGAACAGACCCAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAACTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCAGACCTGACGCTGCACCGCGCCATTAAATATCTGCTGGCGAA > NC_000913/4407941‑4408416 | gcgagCGAAGAAGCGAAGTTCATTTTCAACGCTGAACGCCGTATTGAATGTATCGAACAGACCCAGCGCCCCGACGCGCAAACATTAATTGAAGAGTGCATGATTCTGGAGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGACAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGACGGGCGGTAACa > 1:156374/3‑250 (MQ=255) naaCGCTGAACGCCGTATTGAACGTATCGAACAGACCCAGCGTAACGACGCGCAAAAATTAATTGAAGAGTGCATGATTCTGGCGCATATATCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGACCCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAgc > 1:64025/2‑251 (MQ=255) aCGCCNNATNNNACNNATCGAACAGACCCAGCGTAACGANGCGCACAAATTAATTGAAGCGTGCATGCTNCNGNCGAANNTCTNGGCGGAGCGTNTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCNGNGCACCGAAGCGATTACCTCTTTCCGGTCAGTNCTGGCGGTGCTTGGGCTTTAATTGNCGGGNnggnannnnnnnnn > 2:246918/1‑210 (MQ=255) aCGCCGTATTGAACGTATCGAACAGACCCAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCTAATATCTCGGCGGCGCGTTGGGTTTAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGcc < 1:246918/219‑1 (MQ=255) cGTATCGAACAGACCCAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCGAATCTCTCGGCGGCGCGTTTCGTTGAGCAAGCGAAAGAACCGGCAATGTTCCGTATTCACGACAAGCCGAGAACCGAAGCGATTACATCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCg > 1:311408/1‑251 (MQ=255) cGTATCGAACAGACCCAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGa > 1:275343/1‑209 (MQ=255) cAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTgg > 1:87546/1‑220 (MQ=255) cgcACAAATTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGACAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGCGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAACCCAtg > 1:229904/1‑251 (MQ=255) gcACAAATTAATTGAAGAGTGCATGATTCTAGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTACTCACGACAAGCCGAGCACCGAAGCGATTACCTCGTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTTACTACGCGGAGCTGCTGGAGTCGGTTGCCTATCGTCCTGATGCAGAAATGCTGCAAACCAtgc < 1:294697/251‑1 (MQ=255) aattGAAGAGTGCATGAGTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCTAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATGACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAAGTGCCGGGCTGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCTGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTgcgc < 1:218593/250‑1 (MQ=255) agagTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTAGTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGGTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTAcgcn < 1:64444/181‑2 (MQ=255) gCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGGACTGTTCCGTATTCACGACAAGCCGAGAACAGAAGCGATTACCTCTTTCCGTTCCGTGCTGGCGGAGCTGGGGCTGGAATTGcc > 1:315900/1‑142 (MQ=255) gTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTTCTGGCGGAGCTGTGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCTGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCAtgc < 1:224829/201‑1 (MQ=255) naaaGCGAAAGAACCGGCACTGTTCCGTATTCACGACACGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGAGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAAAAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCg > 1:64060/2‑162 (MQ=255) ggCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCTATTACCTCTTTCCGTTCAGTGCTGGCGTAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAAc < 1:220008/107‑1 (MQ=255) ccGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTCCGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGCATTGc > 1:1589/1‑233 (MQ=255) aGCGATTACCGCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCGGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAGACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTTGCCTGGCATTGCAGTCCTATGCGCGCTTTTCTTCGCCGATTCGTCGTTAGCCAGAcc < 1:270489/251‑1 (MQ=255) cGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTGCCGGGCGGTACCACGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCAGACCTg > 1:325823/1‑251 (MQ=255) ctTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAATTACAGGGCGGTAACAAGCCGGCACCGCGTGACTACGCGGAGCTGCTGGAGACGGTTGCCGAACGTCCTGATGCAGCAATGCTGCAAACCATGCTGATGCGCTCGATGAAACAGGCGATTTACGATCCCGAAAACCGTGGTCACTTTGGcc > 1:290608/1‑186 (MQ=255) cGGAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTACAAACCATGCAGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGcn < 1:63948/202‑2 (MQ=255) gAGCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGCACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATACTGCTGCGCTCGATGAAACAGGCGATTTACGATACAGAAAACCGTGGTCACTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCAGACCTGACGCTGCACCGCGCCATTAAATCTctgct > 1:296534/1‑251 (MQ=255) gCTGGGGCTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGc < 1:220399/168‑1 (MQ=255) ggCTGNAATTGNCNNCCGGTAACAAGCCGGAACCNCGTGACTACGCGGAGNTGCTNGAGTCngg > 2:140099/1‑63 (MQ=255) cTGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCTCTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCAGACCTGACGCTGCACCGCGCCATTAAATATCTGCTGGCGaa > 1:328658/1‑248 (MQ=255) tGGAATTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAAcn < 1:78293/95‑2 (MQ=255) | GAGAGCGAAGAAGCGAAGTTCATTTTCAACGCTGAACGCCGTATTGAACGTATCGAACAGACCCAGCGTAACGACGCGCACAAATTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAAGCGAAAGAACCGGCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATTACCTCTTTCCGTTCAGTGCTGGCGGAGCTGGGGCTGGAACTGCCGGGCGGTAACAAGCCGGAACCGCGTGACTACGCGGAGCTGCTGGAGTCGGTTGCCGATCGTCCTGATGCAGAAATGCTGCAAACCATGCTGCTGCGCTCGATGAAACAGGCGATTTACGATCCAGAAAACCGTGGTCACTTTGGCCTGGCATTGCAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCAGACCTGACGCTGCACCGCGCCATTAAATATCTGCTGGCGAA > NC_000913/4407941‑4408416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |