| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,388,794 | C→T | A193T (GCG→ACG) | mscM ← | miniconductance mechanosensitive channel MscM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,388,794 | 0 | C | T | 92.9% | 30.4 / ‑5.9 | 14 | A193T (GCG→ACG) | mscM | miniconductance mechanosensitive channel MscM |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/8); minor base G (1/0); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCGATAGTTCGCGGTTAATTTTGAATTGCGCGACGATATCTTTCGGCAAATCGGCGCTGTTTTCTGCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTAATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGAGTATTGCCGGTAAGCGTTCCCAGGCGGCGCTCGATCTCATTTAACTGACGGCGGGCGTCGGTTTGCTGTTGCGGCAGTTGATTCAGCGAATCGGCAATCTCGCGGGCGCGCTCCTGCTCTTGCTGGGC > NC_000913/4388562‑4389001 | gccgATAGTTCGCGGTTAATTTTGAATTGCGCGACGATATCTTTCGGCAAATCGGCGCTGTTTTCTGCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTCATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTTGCAGCCCGCTGCGTCAGCTCCCGTTCATCAAc > 1:234358/1‑251 (MQ=255)gccgATAGTTCGCGGTTAATTTTGAATTGCGCGACGATATCTTTCGGCAAATAGGCGCTGTTTTCTGCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGAAGTTGGCTGTTTAATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGc > 1:216513/1‑237 (MQ=255) aaaTCGGCGCTGTTTTCTGCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTAATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGc < 1:170744/251‑1 (MQ=255) gCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTAATTGATTACGCAAGGCCGGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCTCCAGCTGTGAGCGTAAGCGCGCTAATGCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTGCATCAACGAGCGCCTGAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGact < 1:296976/248‑3 (MQ=255) ggTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTAATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGAGTATTGCCGGTAAGCg < 1:19076/251‑1 (MQ=255) gNNNTTGTCTNTNNAATGGNTTTNGCACGTCCGGCAAATCCGCATCCAGTTGCTGGCGCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTNCAGNTCATNAANGAGCGCCTTAATACGNGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGNNTNNNGNCGGTAAGc < 2:234358/218‑1 (MQ=255) aaTTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTtgtn < 1:39438/175‑2 (MQ=255) gATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTTCATCAACGAGCGCCGTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCg < 1:134726/183‑1 (MQ=255) cnTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGGCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCCACGCGAAATTTTGTGCCTGATTGAGCGGAGTATTGCCGGTAAGCGTTCCCAGGCGGCGCTCGATCTCCTTTAACTGACGGCGGGCGTCGGTTTGCTTTTGCGGccgg > 1:253951/1‑248 (MQ=255) cAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGCCAGCTGCGTCAGCTCCCGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGAGTAt > 1:72816/1‑161 (MQ=255) cAGTTGCNNGCGCTCTTTNTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGNTGCGTCAGCNNCANTTCATNANNNANNNCCNTAAGACGTGCAGAGTCAGANTGNNACGCGANATTTTGTGCCTGATTGAGCGGAGTAt < 2:72816/161‑1 (MQ=255) gTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAACGCCCTAATTCCTGGCGCTTATTGGAACACCGCTGAGTCAGCACCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGCCAGACTGAAACCCGGAATTTTGTGCCTGCTTGAGCGGAGTATTGCCGGTAAGCGGTCCCAGGGGGCGCTCGATCTCATTTAACTGACGGCGGGCGGCGGGTTGCTGGTGccgatcggaagagcaaccgcctga > 1:212446/1‑227 (MQ=255) ggCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGTCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGAGTATTGCCGGTAAGCGTTCCCAGGCGGCGCTCGATCTCATTTAACTGACGGCGGGCGTCGGTTTGCTGTTGCTGCAGTTGATGCAGCGAATCGGCAAtctcn < 1:81137/251‑2 (MQ=255) cGTAAGCGCGCTAATTCCTGGCGGTTAATGGCCGACAGCTGCGTCAGCTCCAGCTCATTAACCAGAGCCTTCAAACGTGCCGAGTCAGACTGCAACGCGCACATTTATGCCTGATTGAGCGGAGGATTGCCGGTAAGCATTCCCAGGCGGCGCTCGCTCTCATTTAACTGCCGGCGGGCGTAGGGTTGCTTGTGCGGCAGTTGATTCAACGAATTGGGAATGTCTCGGGCGGGCTCCTgtaaatcgggagg > 1:236013/1‑239 (MQ=255) | GCCGATAGTTCGCGGTTAATTTTGAATTGCGCGACGATATCTTTCGGCAAATCGGCGCTGTTTTCTGCCAGCAATTCGGTACTTTCCAGCGCCCGCTCCGCCTCAAGCTGACGTTGGCTGTTTAATTGATTACGCAAGGCCTGCAAATACGCATCCAGTTGCTGGCTCTCTTTTTCCGCCAGCTCTGAGCGTAAGCGCGCTAATTCCTGGCGGTTATTGGCAGACAGCTGCGCCAGCTCCAGTTCATCAACGAGCGCCTTAAGACGTGCAGAGTCAGACTGCAACGCGAAATTTTGTGCCTGATTGAGCGGAGTATTGCCGGTAAGCGTTCCCAGGCGGCGCTCGATCTCATTTAACTGACGGCGGGCGTCGGTTTGCTGTTGCGGCAGTTGATTCAGCGAATCGGCAATCTCGCGGGCGCGCTCCTGCTCTTGCTGGGC > NC_000913/4388562‑4389001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |