| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,386,061 | C→T | A1104T (GCG→ACG) | mscM ← | miniconductance mechanosensitive channel MscM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,386,061 | 0 | C | T | 90.5% | 41.7 / NA | 21 | A1104T (GCG→ACG) | mscM | miniconductance mechanosensitive channel MscM |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (6/13); minor base G (0/2); total (6/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACAACGTCTGCGATGTGTTGATGTATCTCGAAGAAGACGATACCCGTGATGTTGGTGTGATAATGACGTTACCGCTCTTTTT‑CCCTTTTCTCTGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACGGTGACCCATCTCAGCGGCGTAAATACGCAGCTCGAAAATCTGAATCCCCTGTTGCAGATCCACCAGGA > NC_000913/4385815‑4386285 | aacaacGTCTGCGATGTGTTGATGTATCTCGACGAAGACGATACCCGTGATGTTGGTGCGACAATCACGCTACCGCTCTTTTTTCCCTTTT‑TCTGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGATTCTGTACCCAACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATTAGTTTTGTTTGTGAGCAGGATTGGTTCATCCGGCACACACACTTCCAAACTTCCCGTCTg > 1:286753/1‑250 (MQ=255) gCGATGTGTTGATGGAGCTCGAAGAAGACGACACCCGGGATGTCGGGTTGATAATTACGCTACCGCTCTTGTT‑CCCTTTCGGCTGGCTCGCGTTGTGGCGAAAACAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTGTTCT‑CTGCGCTGTCAGGTTTGTTTGTGAGCCGGATTGGTTCAGCCGGCACACACACTTACAAACTTCCCGTCTGACGACCTTTg < 1:138843/250‑1 (MQ=255) cGATGTGTTGATGTATCTCGAAGAAGACGATACCCGTGATGTTGGTGTGATAATGACGTTACCGCTCTTTTT‑CCCTTTTTTCTGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTTGTTCATCCGGCACTCAAACTTACAAACTTCCCGTCTGACGACCTTTGcc < 1:258711/251‑1 (MQ=255) ccGCTCTTTTT‑CCCTTTTTTTTGGTTCGCTTTGTGGCGAAATAAACGCGGCTGGATTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGGCGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGGCGGGTTGGTTCATCTGGCACACACACTTATAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGACAGTGTTCTCCCCGTTTGTTTTCCGTTTCGGCTTTCCCGACGCCTCTGGa > 1:316855/1‑249 (MQ=255) ttttt‑CCCTTTTTTCTGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCgn < 1:200700/250‑2 (MQ=255) t‑CCCTTTTTTCTGGTTCTCTTTGTGGCTAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCATTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCTCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAAt < 1:309657/250‑1 (MQ=255) ttttttgctGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCACTATCAGTTTTGTTTGAGAGCCGGATTGGTGCATCCGGCACACAAACTTACAAACGTCCCGTCTGACGTCCTTTGCCCGCAGACGTCAGCGTtc < 1:137905/187‑1 (MQ=255) cGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGa > 1:243356/1‑249 (MQ=255) aaaaaaaCGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTGTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAagcc < 1:305849/251‑1 (MQ=255) gCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTATCGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTGCCAGACGCATCTGGAAGGTCGGGTATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGc < 1:327612/251‑1 (MQ=255) cGGCTACTGGCTGTGGCAGTTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCGTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACgg < 1:72403/250‑1 (MQ=255) cGGCTACTGGCTGTGGCAGTTTTTTTCTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGGCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACgg < 1:72409/250‑1 (MQ=255) cAGTTTTGT‑CTGCGCTATCAGGTTTGTTTGTGAGCCGGATTGGTGCATCCGTCACACAAATTTACAATCTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCGCCTCGTTTGTTTACCGGTGAGGCTTTCCAGGCGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTggg < 1:46288/180‑1 (MQ=255) gTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCTCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCtg < 1:318669/203‑1 (MQ=255) tttgtttaTGAGCCGGATTGGTGCATCCGGCACACAAACTTGCAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAggn < 1:58521/110‑2 (MQ=255) ttCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACGGTGAACCATCTCAGCGGCGTAAATACGCAGCTCGAAAATCTGAATccn < 1:200725/237‑2 (MQ=255) ttCATCCGGCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGNGGGNNNNNaannnnnnnnnn > 2:200725/1‑144 (MQ=255) cGGCACACAAACTTACAAACTTCCCGGCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCATCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGTCATACGGTGACCCATCTCAGCAGCGTAAATACGCATCTCGAAAATCTGAATCCCCTGTTGCAGATCCACCAGGa < 1:151618/251‑1 (MQ=255) ggCACACAAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCACGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACGGGGACCCATCTCAGCGGCGTAAATACGCAGCTCGAAAATCTGAATCCCCTGTTGCAGATCCACCAGGa > 1:207548/1‑250 (MQ=255) gCACACAAACTTACAAACTTCCCGTATGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGGGGCTTTCCAGACGCATCTGGAAGGGCGGGTATGGCATATAGATACCGTGGGCATGGAAGCCAGCCAGAGTCAGCGGGTGGAGCTCATGGCGTAGCGGCATACGGTGACCCATCTCAGCGGCGTAAATACGCAGATCGAAAATCTGAATCCCCAGTTGCCGATCCACCAgaa > 1:2284/1‑247 (MQ=255) cacacaAACTTACAAACTTCCCGTCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACGGTGACCCATCGCAGCGGCGTAAATACGCAGCTCGAAAATCTGAATCCCCTGTTGCAGATcc < 1:225887/241‑1 (MQ=255) | AACAACGTCTGCGATGTGTTGATGTATCTCGAAGAAGACGATACCCGTGATGTTGGTGTGATAATGACGTTACCGCTCTTTTT‑CCCTTTTCTCTGGTTCGCTTTGTGGCGAAAAAAACGCGGCTGGTTTATGTACGCCACCGCGCTGGCTATTTTCGGCTACTGGCTGTGGCAGTTTTTT‑CTGCGCTATCAGTTTTGTTTGTGAGCCGGATTGGTTCATCCGGCACACAAACTTACAAACTTCCCGCCTGACGACCTTTGCCCGCAGACGTCAGCGTTCTCCCCGTTTGTTTACCGTTGAGGCTTTCCAGACGCATCTGGAAGGGCGGGAATGGCATATCGATACCGTGGGCATGGAAGCCAGCCAGAATCAGCTGGTGGATCTCATGGCGTAGCGGCATACGGTGACCCATCTCAGCGGCGTAAATACGCAGCTCGAAAATCTGAATCCCCTGTTGCAGATCCACCAGGA > NC_000913/4385815‑4386285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |