| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,346,714 | G→A | P205S (CCC→TCC) | fumB ← | fumarase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,346,714 | 0 | G | A | 93.8% | 38.9 / ‑6.2 | 16 | P205S (CCC→TCC) | fumB | fumarase B |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (5/10); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTTCCAGCAGTTCCTGTTCCAGCTGGACATCGCGGAACGCCTGACCATGTTCGTTCCCTTCCGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGGAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGCCTTTCGACAGCGTTTCTTCATCACCGCCGCCGG > NC_000913/4346491‑4346959 | tctTCCAGCAGTTCCTGTTCCAGCTGGACATCGCGGAACGCCTGACCATGTTCGTTCCCTTCCGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTcagcag < 1:132972/233‑1 (MQ=255) ggACATCGCGGAACGCCTGACCATGTTCGTTCCCTTCCGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGGACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAgccg < 1:291221/251‑1 (MQ=255) cATCGCGGAACGCCTGACCATGTTCGTTCCCTTCCGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCCGGCGGCAGTCCCGCGGGGACGCCTTTTCTCGTCGAGGGAGTTTTTCTTTTTGGCGGAAGTCAGAAGGGCGTTTTGTTTC‑TGGTAGAGGTACGTTTTTGTTGGC‑GAgccgccc > 1:109926/1‑250 (MQ=255) ncGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGAATTTTCTCGACGAGGAAGGTTTTCAGTTTGCCGGGAGTCAGCAGGGG‑TTTGGTTTCCTGGTAGAGATACGGTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCCAAGGAACTTGTAatcatcc > 1:85234/2‑250 (MQ=255) ggttTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGTCGGGCAGGCGGCAGTACCGAGGGTACGCATGTTCTCGACGAGGAAGTTTTTCAGTTTGTCGGAAGTcagcagn < 1:62270/118‑2 (MQ=255) gttTCCGCAGACGTACCGCCAAGCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCAGTTTCTCGACGAGGAAGTTTGTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCTCCTTTCGCAACGCAAAGTAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAg < 1:236071/235‑1 (MQ=255) caAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTc < 1:145277/251‑1 (MQ=255) cgATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTgcgc < 1:2149/193‑1 (MQ=255) gcggGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATGCGTTTT‑GTTGGTAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTc < 1:136215/172‑1 (MQ=255) gTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGAAGTCAGCATGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGa < 1:283014/224‑1 (MQ=255) ggTACGCATTTTCTCGACGAGGAAGTTTTTCCGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGCGATAAGTTTT‑GTTGGCAGAgc > 1:117678/1‑92 (MQ=255) ngacgaGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTcgcaac > 1:198693/2‑94 (MQ=255) cgacgaGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTcgcaac < 2:198693/94‑1 (MQ=255) gacgaGGAAGTTTTTCAGTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCTCAggn < 1:78475/212‑2 (MQ=255) gTTTGCCGGAAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCCGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGCCTTTCGACAGCGTTTCTTCATCAccgc > 1:136663/1‑249 (MQ=255) gCCGGAAGTCAGCCGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGCCTTTCGACAGCGTTTCTTCATCACCGCCGCCgg > 1:100586/1‑251 (MQ=255) | TCTTCCAGCAGTTCCTGTTCCAGCTGGACATCGCGGAACGCCTGACCATGTTCGTTCCCTTCCGTCGGCAGTTCATCGTAATAGTGAGCGCTTGCTAACTTGACGGTTTTCAGGTTGGTTTCCGCAGACGTACCGCCAATCACAAACGCGATATGGTACGGCGGGCAGGCTGCAGTACCGAGGGTACGCATTTTCTCGACGAGGAAGTTTTTCAGTTTGCCGGGAGTCAGCAGGGC‑TTTGGTTTCCTGGTAGAGATACGTTTT‑GTTGGCAGAGCCGCCGCCTTTCGCAACGCAAAGGAATTTGTACTCATCGCCATCTACCGCGTACAGGTCGATTTGCGCAGGCAGGTTAGTGCCGGTGTTGACCTCTTTGTACATGTCCAGCGCCGCATTCTGTGAATAGCGCAGGTTATCTTCGATATAGGTGTTATAGACGCCTTTCGACAGCGTTTCTTCATCACCGCCGCCGG > NC_000913/4346491‑4346959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |