| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,330,931 | G→A | E144K (GAA→AAA) | proP → | osmolyte:H(+) symporter ProP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,330,931 | 0 | G | A | 90.0% | 19.6 / ‑3.5 | 10 | E144K (GAA→AAA) | proP | osmolyte:H(+) symporter ProP |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (7/2); total (7/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.19e-01 | |||||||||||
CACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTG‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTGGGGCTGGCGTATTCCGTTCTTTATCGCTCTGC > NC_000913/4330711‑4331126 | naCTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCAATAAATATGGTCGCCAGAAGATCCTCACTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCgg > 1:261303/2‑251 (MQ=255) ttCTCCGTTCCCTTTCTGATTCGTCCGCTTGGCGCGCTCTTCTTTGGTATGTTGGGCAATAAATAAGGTCGCCAGAAGAACCTCAATATAAATAATGAGATTATGACGATCAGAACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGAACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTAGGCGGTA‑AATATACCGGGGCGGCGATATTTGTTGCGGAAt > 1:129501/1‑250 (MQ=255) gACCGCTGGGCGGACTCGTCTTTGGTATGTTGGGCAATAAATATGGTCGCGAGAAGATCCTCTCTATCACGATTGTGATTATGTCGATCAGGACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGGCCCGATTCTGCGGTTTATCTGTAAGGTGTCACGAGGTTTCGCGGTCGGCG‑TGTAATATAGCGGGGCGTGGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGc < 1:215001/251‑1 (MQ=255) ggTCGCCAGAAGATCCTCACTATCACTATTGTGATTATGTCGATCAGTACATTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCAACGATCCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGTCGGTA‑ACTATACCGGGGCGGCGATATTTGTTGCGGAATACTCCTCTGACCGTAAACGTGGCTTTATTGGCAGCTGGCTGGACTTcagagcggaataaaccaagtc > 1:228668/1‑231 (MQ=255) ngATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATg > 1:85620/2‑173 (MQ=255) gATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCAACCATTGTCg > 1:311178/1‑251 (MQ=255) attggggCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCGGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGTTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTg < 1:237950/220‑1 (MQ=255) ggCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTGGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTGGGGCTGGCGTATTCCGTTCTTTATCGCTCTGc < 1:156557/251‑1 (MQ=255) ccGATTCTGCTGTTGATCTGTAAGATGGCACAAGGGTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCACTGACCGTAAACGTGGCTTTATGGGCCgctggct > 1:297285/1‑125 (MQ=255) gTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTA‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCt > 1:209337/1‑144 (MQ=255) | CACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTG‑AATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTGGGGCTGGCGTATTCCGTTCTTTATCGCTCTGC > NC_000913/4330711‑4331126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |