| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,319,543 | G→A | R22C (CGC→TGC) | phnJ ← | carbon‑phosphorus lyase core complex subunit PhnJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,319,543 | 0 | G | A | 93.3% | 38.4 / ‑6.0 | 15 | R22C (CGC→TGC) | phnJ | carbon‑phosphorus lyase core complex subunit PhnJ |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (6/8); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
CGTCGCATCGTCCGTACGTTCCGTGGTGTTTACCCCGGTCACGCGCTTGAAGAAGTTGCGAATCGACACGGCGTTGGTGGTGTCATCCGCGCCCTGGTCAATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCGGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGTTTGAGGTGTGAGACAAAGCCTGCGGCTTCGACGTTGTCGGCATGTGCCAGCACGAACTCTTCATCCTGCGCCGGGCC > NC_000913/4319301‑4319751 | cGTCGCATCGTCCGTACGTTCCGTGGTGTTTACCCCGGTCACGCGCTTGACGAAGTTGCGAATCGACCCGGCGTTGGTGGTGTCATCCGCGCCCTGGTCAATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATc > 1:91710/1‑250 (MQ=255) ggtgTTTACCCCGGTCACGCGATTGAAGAAGTTGCGAATCGACACGGCGTTGGTGGTGTCATCCGCGCCCTGGTCAATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGt > 1:105219/1‑251 (MQ=255) cGAATCGACACGGCGTTGGTGGTGTCATCCGCGCCCTGGTCCATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTCGCGGTAAGCTGAATCACGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAACCGGCACCTGCTAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCCGATTAGCCATGGt > 1:181286/1‑251 (MQ=255) gACACGGCGTTGGTGGTTTCATCCGCGCCCTGGTCAATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTTAATGCCGCCGGTTCCCCAGTCGTACGGCATCGGCATCGCGCGCCCGCCAAACGTCACCTGATAACCGGGGATCGCCACCGCTTGTAAGATGGCGCAGCGGATCATGCGttt < 1:209696/194‑1 (MQ=255) cgcgCCCTGGTCAATCGCCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCAGCGGCATCTCGCGCCCTCCAAGCGGCACCTGATAACCGGGGATCTCCACCGCTTTTAAGATTGCGTAGTGGAGCATGCGTGTGTTCTGCTCGTCGAGGTAGGCAAAGGTGTATCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGc < 1:306117/251‑1 (MQ=255) ttCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAg < 1:22709/183‑1 (MQ=255) gCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAg < 1:111090/217‑1 (MQ=255) gCTGAATGCCGCCGGTACCGCAGACGTCCGGCATCGGCATCTCGCGCCCGCCACACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCGTGCGTTTGGACTGCTCGTCGAGGAAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGTTTGAGGTGTGAGCCAAAGcc > 1:252019/1‑251 (MQ=255) gAATGCCGCCGGTTCCCCAGCCGTACGGCATCGTCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCGCCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCt < 1:41312/120‑1 (MQ=255) aaggccgccGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGGCTGCTCGTCGAGGGAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGGTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGTTTGAGGTGTGAGACAAAGCCTGCg < 1:252283/248‑1 (MQ=255) cccgccAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGCTCTGCTCGTCGAGGTAGGCCAAGTTGTAGCCGCTCAGATTAGCAATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGCAATCGACGTAGTGGGGGAGTTTGCGGTGTGAGACAAAGCCTGCGGCTTCGACGTTGTCGGCATGTGcc > 1:52766/1‑233 (MQ=255) cgccAAACGGCACCTGTTAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGTTTGAGGTGTGAGACAAAGCCTGCGGCTTCGACGTTg > 1:77037/1‑219 (MQ=255) gCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGGTTGAGGTGTGAGACAAAGCCTGCGGCTTCGACGTTTTCGGCATGTTCCAGCACGAACTCTTCATCCTGCGCCGGGcn < 1:33717/251‑2 (MQ=255) cncccncNNTNNTAANATGGCGCGGCGGATCATGCGTNNGGTCTGCTCNTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTNCAGACGTTTNNGTNGCTCCNGNNNGNNNTGNAAATCGACGTAGTGGGGGANTTNNAGGTGTNAGACAAAGCCTGCGGCTTCGACGTTg < 2:77037/185‑1 (MQ=255) ggCGCAGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGGTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGTGAGTTTGAGGTGTGAGGCAAAGcn < 1:83496/157‑2 (MQ=255) | CGTCGCATCGTCCGTACGTTCCGTGGTGTTTACCCCGGTCACGCGCTTGAAGAAGTTGCGAATCGACACGGCGTTGGTGGTGTCATCCGCGCCCTGGTCAATCACCTTCAGCACGTCGCTTTCGCCAATCACGCTGGCGGTAAGCTGAATGCCGCCGGTTCCCCAGCCGTACGGCATCGGCATCTCGCGCCCGCCAAACGGCACCTGATAACCGGGGATCGCCACCGCTTTTAAGATGGCGCGGCGGATCATGCGTTTGGTCTGCTCGTCGAGGTAGGCAAAGTTGTAGCCGCTCAGATTAGCCATGGTTCTGCTCCTGTTGCAGACGTTTGAGTAGCTCCAGTTCGGCCTGGAAATCGACGTAGTGGGGGAGTTTGAGGTGTGAGACAAAGCCTGCGGCTTCGACGTTGTCGGCATGTGCCAGCACGAACTCTTCATCCTGCGCCGGGCC > NC_000913/4319301‑4319751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |