| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,316,467 | G→A | P251L (CCC→CTC) | phnM ← | RPnTP hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,316,467 | 0 | G | A | 93.3% | 35.7 / NA | 15 | P251L (CCC→CTC) | phnM | RPnTP hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (9/5); minor base C (1/0); total (10/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACT > NC_000913/4316246‑4316689 | ncAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCTGGAGTGCGAGCCGCCGCACACAATATTCGGCGCGCCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTgg > 1:36553/2‑251 (MQ=255) ggTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGAGGGGTAGTAGTTGGAAGCGAGGATATCCAGCAGGCCAAGCCGCGCCAGTTCACTGGCCGCCACCATGCCGGAGTGCGAGACGCCGCACACAATATTCGGCGCGCCCATCAAAACGCTCATGCCATGCTTGCGCGAGGCTTACGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCCCGc > 1:216020/1‑228 (MQ=255) gTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCACACAATATTCGGCGCGCCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAAcg < 1:105994/244‑1 (MQ=255) tagtagTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCACACAATATTCGGCGCGCCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTcgcgcgcg > 1:182699/1‑251 (MQ=255) cACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCACACAATATTCGGCGCGCCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTgcg > 1:112522/1‑251 (MQ=255) gCCGGAGTGCGAGCCGCCGCACACAATATTCGGCGCGCCCATCAACACGTTCATGCCATGCTTGCGCGCGGCTTCCGCAGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGgacggc > 1:70471/1‑201 (MQ=255) ncGNGCCNCNNCNNACANTATTCGGCGCGCCCATCAGCANNTTCATGCCANGCTTGCGCGAGGCTTCCGCAGCTTCGAACGTGGTGAGAAATTCGGCGATCACGNTGCCAAGCTNNGGNGATTCNGNNNCNNNGGNGTGGGTGGCGTCATCGTGGNTGNNAAGCGCNATTTTGCGCGCGCGGCGCAGgacggc < 2:70471/192‑1 (MQ=255) ngcCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGATGGTGAGATTCAGAAACGTGGGCGTGGGCGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTg > 1:62900/2‑248 (MQ=255) gcCCATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAAtt > 1:3876/1‑142 (MQ=255) cccATCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGCGAAATTCGGCGCTCACGCTGCCACGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGGCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAggg > 1:148198/1‑250 (MQ=255) aTCAACACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGc < 1:251954/210‑1 (MQ=255) atgccatgcTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGGAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTgcggc < 1:143553/185‑1 (MQ=255) cgAGGCTTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCACGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACt > 1:104116/1‑251 (MQ=255) cgAGGCGTCCGCCGCTTCGAACGTGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGACGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATAcn < 1:202195/251‑2 (MQ=255) tCGAACGAGGTGAGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCACCGTGGGCGAGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACCGGACGGCGATGGATTCGCGATTCGGCTGCGACAAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCa > 1:46910/1‑187 (MQ=255) | GCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCCGCCGCTTCGAACGTGGTGGGAAATTCGGCGATCACGCTGCCAAGCTGGTGAGATTCAGCAACGTGGGCGTGGGTGGCGTCATCGTGGCTGGCAAGCGCAATTTTTCGCGCGCGGCACAGGGCGGCGATGGATTCGCGATTCGGCTGCGACCAGCGTGCGGCGAGCGCCAGTTGCTCTTCTTCGTACTGCTGCATCTGCGCATCAGTGAGGGAGTATTTGCCCTGATAATATTCGCGATACT > NC_000913/4316246‑4316689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |