| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,233,540 | A→G | intergenic (‑307/‑218) | lysC ← / → pgi | aspartate kinase III/glucose‑6‑phosphate isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,233,540 | 0 | A | G | 92.9% | 34.3 / ‑6.0 | 14 | intergenic (‑307/‑218) | lysC/pgi | aspartate kinase III/glucose‑6‑phosphate isomerase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (7/6); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCAGCTAATAAATGCTTCACTGCGCTAAGGGTTTACACTCAACATTACGCTAACGGCACTAAAACCATCACATTTTTCTGTGACTGGCGCTACAATCTTCCAAAGTCACAATTCTCAAAATCAGAAGAGTATTGCTAATGAAAAACATCAATCCAACGC > NC_000913/4233315‑4233779 | gCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACTCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGc < 1:184781/251‑1 (MQ=255) aGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATggn < 1:29275/251‑2 (MQ=255) cGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACTCCGTTACTTTGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTGCGGTTATAAATAAAGGGTTAGTGTGGCTGTTGTCAACGATGGGGTCATGCTGATTTTTCATCCACTCCTGGCGGTCagtag < 1:136584/251‑1 (MQ=255) tctcgtccgatctaggaACGTGGCCAGCCTTTCAATCACCTCGGCGATGCACCCCCGCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCGTCGTCTGGACGGCGCTAGTGCAGGTAGTACGGTTATAAAGAAAGGGTGAGCGGGTCGGTTGTCAACGATGGGGTCATGTGGAGTTTTCATCCACTCCTCGCGGTCAGTAGTTCAGCTAATAAATGCTTCACTGCGCTAAg < 1:171494/235‑1 (MQ=255) ncTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATggg > 1:61111/2‑182 (MQ=255) cACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGTCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCAGCTAATAAATGCTTCACTGCGCTAAGGGTTTACACTCAACATTACGCTAACGGCACTAAAAcc < 1:180096/251‑1 (MQ=255) aCCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCTGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCAGCTAATAAATGCTTCACTGCGCTAAGGGTTTACACTCAACATTACGCTAAc < 1:267641/225‑1 (MQ=255) ngACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTCCGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCCGCTAATAAATGCTTCACTGCGCTAAGGGTTTACACTCCACATTACGCTAACGGCACTAAAACCATCACCTTTTTCTTTGACTGGCGCTACAATCTTcc > 1:64531/2‑251 (MQ=255) attGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTTAACGATGGGGTCATGCGGATTTTTCAt > 1:524/2‑105 (MQ=255) ggCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGCAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCACCGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCCGCTAATCAATGCTTCACTGCGCTACGGGTTTACAATCAACATTATGCTAACGGCACTAACACCATCACATTTTTCTGTGACTGGCGCTACACTCTTCCAAAGTCACAATTCTCAAAATCagaag > 1:212311/1‑249 (MQ=255) tcttctGGCCTGCGCTAGCGCAGGTAGTAAGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAAAGATAGGGGCATGCGGCTTTTTTATCCACTCCTTGCGGTATGTAGTTCAGCTAATAAATGTTTACCTGTGCTAAGGGTTTGCATTCAACATTTCGCTAACGGACCTCAAACCATCATATTTTTCTGTGACTGGCGCTATAATCTTCCAAAGTCAACATTTTCAAAATCATAAGAGTATTTCTAATg > 1:319207/1‑251 (MQ=255) gcAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGCAGTTCAGCTAATAAATGCTTCAc > 1:180040/1‑112 (MQ=255) cAGGTAGTACGTTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGAAGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTCGTTAAGCTAATAAATGATTAACTGCGCTAAGGGATTACACTCAACATTACGCTAACGGCACTAAAACCCTCACATTTTTCTGTGACTGGCGCTACAATCTTCCAAAGTCACAATTCTCAAAATCAGAAGAGTATTGCTAATGAAAAACATCAATCCAACGc > 1:151485/1‑250 (MQ=255) gtagtnCATTTNTNNCTCACGCGTGCGCGGGCCGNGTGTCAACGATGGGGNCATGNGGAttnttn > 2:130092/1‑64 (MQ=255) | GCTACTATTTTCACCCAGAAGTGCTCCACCACTTGCGAAACGCCCGACTGCGAACGCTTCTGGTGACAACCCAGGGGATTCAGCCCCTGTAGCCGATGATGAACGTGGCCAGCCGTTCAATCACCTCGGCGATGCACCCCCTCAGGTGTTATCACAGGACTGGCTCCTCCAACACCGTTACTTGGGCAACGCGCCTCTTCTGGCCTGCGCTAGCGCAGGTAGTACATTTATAAATAAAGGGTGAGCGGGGCGGTTGTCAACGATGGGGTCATGCGGATTTTTCATCCACTCCTGGCGGTCAGTAGTTCAGCTAATAAATGCTTCACTGCGCTAAGGGTTTACACTCAACATTACGCTAACGGCACTAAAACCATCACATTTTTCTGTGACTGGCGCTACAATCTTCCAAAGTCACAATTCTCAAAATCAGAAGAGTATTGCTAATGAAAAACATCAATCCAACGC > NC_000913/4233315‑4233779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |