| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,519,188 | C→T | intergenic (‑124/+277) | aroK ← / ← hofQ | shikimate kinase 1/DNA utilization protein HofQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,519,188 | 0 | C | T | 89.7% | 67.3 / ‑2.7 | 30 | intergenic (‑124/+277) | aroK/hofQ | shikimate kinase 1/DNA utilization protein HofQ |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base T (12/14); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCG > NC_000913/3518956‑3519410 | gATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACAAGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTGCAGCGGGTTTGGCAACTg < 1:91279/251‑1 (MQ=255) aTTCCATATTGAGTTGTTGAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGAGTTTCTCTGCCATTTTTTCGGTAATACTAAGACTATTCGTTACTGATACACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAACTTATCTCAATACTTCAGCGGGTTTGGCAAc > 1:317167/1‑234 (MQ=255) atatTGAGTTGTTGAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGTCTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCTCCCATCCctct < 1:267743/251‑1 (MQ=255) gCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCt < 1:133844/251‑1 (MQ=255) gcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAgcgcg < 1:256892/250‑1 (MQ=255) gCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTa < 1:308907/251‑1 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCGTCGCTCAGAGAGCGCCGCATGACATGATCTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATc < 1:225314/222‑1 (MQ=255) acccAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTCTTCGTTAATGATTTACACGCTTCGCTCAGAGATCGCCGCAGGACATGAACTAAAACCTCATAAGATATTGCGCGAGTCAGACTGCAAATTATTTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGc > 1:324307/2‑229 (MQ=255) aaCCAGAAAGATATTGCGGTTCTCTGCCATTGTTTCGGTGCTACTAAGATGATTCGTTAATGAAAATGCGGCTTCGCGCAGGCAGGGCCGCAGGACAGGTACGGAAGTCTCATAAGATAGTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCg < 1:180858/159‑1 (MQ=255) cAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAGACCTCATAAGATATGGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCggg < 1:322984/251‑1 (MQ=255) gAAAGATATTGCGTTTATCTGCCATTTTTTCGGTACTACTACGACTATTCGTTAATGATCAACCCGCTTCGCTCAGCGAGCGCCGCAGGACATGAACTGAAACCTAATAAGATATTGCGAGAGTCAGACTGCAAATTATCACAATACTCCAGCGGGTTTGTCAACTGAATAATTCACCCATCCCTCTGCata > 1:331864/1‑192 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGTCTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAg < 1:241857/197‑1 (MQ=255) gCGTTNNTCNNNCANNTTTTCGGTACTACTAAGACTATTNGTTAATGATAAACCCGCTTCGCTCAGAGANCNCNGAAGNNCATNAACTGAAACCNCATAAGATATTGCGAGAGACAGACTGAAAATGATCTCAATACTCCAGCNGNTTTGGCAACTGAATAAATCACCCATCCCTCTNAATATCTGGTCGCTGCAAg > 2:241857/1‑197 (MQ=255) tttttCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAAGTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAgc < 1:186515/183‑1 (MQ=255) tttttCGGTACTACTAAGACGATTCGTTAATGATAAACCCGCTTCGCGCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTgg < 1:41889/136‑1 (MQ=255) actactAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAg > 1:89795/1‑234 (MQ=255) cGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGCAACCTCATCAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACATCAGCGGGTTTGGCAACTGAATAACTCACACATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCCCCGCTCTGGCGATAAATCACCg > 1:222236/1‑198 (MQ=255) aaggtgaaaCCCGCTTCGCTCAGATAGCGCCGCAGGACATGAACGGAAACCTCATAATATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTCGCAACt < 1:53802/107‑1 (MQ=255) aaTGATACACCCGCTTCGCTCAGAGAGCGCCGAAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTACGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAAt > 1:113155/1‑236 (MQ=255) tGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCCTAAGATATTGCGAGAGTCAGAATGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAg > 1:137347/1‑152 (MQ=255) cccGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTTAAAATTATCTCAATACTTCAGCGGGTTTGGc < 1:116199/100‑1 (MQ=255) ccGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGATTGGCCACTGAATAAATCACCCATCCCTCTGCata > 1:210432/1‑129 (MQ=255) gtCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCNAGCNNNNNGc > 2:191400/2‑144 (MQ=255) gagagCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAagagn < 1:191400/251‑2 (MQ=255) agCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCGCCGGGTAAGATTAGCGTAAAAAATACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCAcc < 1:163987/251‑1 (MQ=255) gCGAGAGTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATACATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAatca > 1:105049/1‑182 (MQ=255) cGAGAGTCAGACTGACACTTATCTCAATACTTCAGCGGCATTGGCAACTGCATAAATCAACAATCCCTCTGCATATCTGGTCGCTGCAAGTGCGCTGCCTTGCTACCACCGCTCAGGCGATAAATCACCGGATAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCATGACTGATAAATCATCCTCATGGAACGCAGGCAGCGAAGAGCCCCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgc > 1:247077/1‑251 (MQ=255) gagTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTgcgcg > 1:5545/1‑251 (MQ=255) gTCAGACTGAAAATTATCTCAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTac < 2:200352/101‑1 (MQ=255) ctcAATACTTCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGAGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTaaaaaa > 1:217877/1‑128 (MQ=255) | GATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCG > NC_000913/3518956‑3519410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |