| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,507,706 | C→T | intergenic (‑5/+6) | yhfU ← / ← php | DUF2620 domain‑containing protein YhfU/putative hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,507,706 | 0 | C | T | 96.2% | 75.0 / NA | 26 | intergenic (‑5/+6) | yhfU/php | DUF2620 domain‑containing protein YhfU/putative hydrolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (13/12); minor base G (0/1); total (13/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCTATCACCGCGATGGCAATCGACAATGCCGCGCCCGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTCTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGACAGCATGACGCGGTTCAGCAACCCACGGTCGCGTAGCGCATGAAGCATCGCAATACGCTTTTCGTCCGGGTAGTAACTGT > NC_000913/3507498‑3507950 | nccTATCACCGCGATGGCAATCGACAATGCCGCGCCCGCACCGGTATTAAACGCGCCGATGTAATCATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACCGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCCCGCTGTAATCCTGCAAAGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAACAATTGAGAGGGATTTTCACGTAacatc > 1:66639/2‑251 (MQ=255) ggCAATCAACAATGCCGCGCCCGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCAGTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCGCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTTAGAGGGATTTTCACGTAACAGCACATCCACATCGGc < 1:98293/250‑1 (MQ=255) ngACACTGCCGCGCCCGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCctgactg > 1:78528/2‑251 (MQ=255) cGACAATGCCGCGCCCGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTTCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCctgactg < 1:288681/251‑1 (MQ=255) cccGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGgc > 1:130397/1‑251 (MQ=255) gcgcCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAATTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAgg < 1:331439/251‑1 (MQ=255) gATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAggtggtn < 1:193387/251‑2 (MQ=255) taatanNCCNNNTGNNCGGATTTCACCTTCATTTCCGCTNCCATGTCGTTGTGAATGAAAACTTCAAAANANCNTGGTNNCGTNGATTCCATAGNTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATNANTTTGTCCTTATTGGAAAAATTGGGAGGGATTNTCACGTAacgtcacagatcggaaanacgcnntgnan > 2:242715/1‑193 (MQ=255) taataaTCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTGTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAacatcac < 1:242715/192‑1 (MQ=255) aTTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAAGTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAacc < 1:288515/251‑1 (MQ=255) cACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCg > 1:75179/1‑251 (MQ=255) aTGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGTGCCGTCGCTTCAATAGTTTTTGTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCGTTTTCATGAGTGTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAgc < 1:284744/251‑1 (MQ=255) gTTGTGAATGAAAAATTCAAAACAGCCAGGAGCCGTCGATTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCAACTCTTTTTCATGAGTTTGTCATTATTGGAAAAATTGAGAGGGATTTTCACGTCACATAACATCCACATCGACCTGACTGAATCCTGACTGGGGCAATTTAGGAATCAAGGTGGTTAGTAAATAGTAATAGCCGTAAACACCGTTgg > 1:236896/1‑231 (MQ=255) gaatgaaAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCCATTGCGGAATAAAGGAGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCt > 1:108787/1‑228 (MQ=255) tCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCGGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCATGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCAGCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGAc < 1:175556/250‑1 (MQ=255) nanaaNNGCCANGAGCCGTCTCTTCAATAGTTTTTTNAATCTGCTCACTCTTTAAGCCTGCAACGCCANTNTTTTTCATGAGTTTGTCCTTATTGAAAAAATTGAGAGTGATTTTCACGNAACATCACATNCACNNCGACNTNANTGAATCCTGACTGGCGCAATTGCGGAATANAGGTGGTTAGTAAATAGTCATAGNNATNNNAANNGTTgg < 2:236896/213‑1 (MQ=255) ccAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTcc < 2:6434/81‑1 (MQ=255) ccAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTcc > 1:6434/1‑81 (MQ=255) cAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCCCGCTGTAAGCCTGCACCGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCg > 1:132497/1‑201 (MQ=255) cGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCGTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCTGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAATGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAGCGGCGCGGAATAGCCATCGGCAGCATGACGCTGGTCAGc < 1:259443/251‑1 (MQ=255) tttttAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGACAGCATGACGCGGTTCAGCAACCCACGGTCGCNt < 1:255610/250‑1 (MQ=255) ttttAATCTGCTCACGCTGTAAGCCTNCAACGCNNATNTTTTTCATGAGTTTGTCCTNATNNNANNNANTGAGCNGGNNTTTCACGTANCATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCACTTGCGGAATAANGGTGGTTAGNNAATAGTCATAGCCATAACCACNGTTNNCNNTNAAANggn > 2:71188/1‑192 (MQ=255) ncTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATgg > 1:37626/2‑183 (MQ=255) cTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTTTGTCCTCATTGGAAACATTGAGAGGGATTTTCACGAAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGACAGCATGATGCGGTTCAGCAACCCACGGTCGCGTAGCGCATGAAGCATCGc > 1:154674/1‑250 (MQ=255) cTGCAACGCCAATCTTTTTCATGAGTTTGTCCTTATTGGAAAAATTGAGAGGGCTTTTCACGTAACATCACATCCACATCGGcc > 1:191041/1‑84 (MQ=255) aTGAGTTTGTCCTTAGTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCATGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCGCCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGACAGCATGACGCGGTTCAGCAACCCACGGTCGCGTAGCGCATGAAGCATCGCAATACGCTTTTCGTCCGGAGAGTAACTGt < 1:71188/251‑1 (MQ=255) | GCCTATCACCGCGATGGCAATCGACAATGCCGCGCCCGCACCGGTATTACACGCGCCGATGTAATAATCCAGTTGCCCGGATTTCACCTTCATTGCCGCTTCCATGTCGTTGTGAATGAAAACTTCAAAACAGCCAGGAGCCGTCGCTTCAATAGTTTTTTTAATCTGCTCACGCTGTAAGCCTGCAACGCCAATCTTTTTCATGAGTCTGTCCTTATTGGAAAAATTGAGAGGGATTTTCACGTAACATCACATCCACATCGGCCTGACTGAATCCTGACTGGCGCAATTGCGGAATAAAGGTGGTTAGTAAATAGTCATAGCCATAACCACCGTTGGCTTTTAAATGGGAGCGGCGCGTAATATCCATCGACAGCATGACGCGGTTCAGCAACCCACGGTCGCGTAGCGCATGAAGCATCGCAATACGCTTTTCGTCCGGGTAGTAACTGT > NC_000913/3507498‑3507950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |