| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,456,444 | C→T | A23V (GCT→GTT) | gspD → | Type II secretion system protein GspD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,456,444 | 0 | C | T | 93.3% | 30.4 / ‑5.3 | 15 | A23V (GCT→GTT) | gspD | Type II secretion system protein GspD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (7/7); minor base G (0/1); total (7/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.88e-01 | |||||||||||
GATCAATAATCTTTCGCTGACCCACCCTGATGAGGTTTCACAGGCATTAAGTTTACTGCTAACTCAACAAAGTGCTCAGTTTACAATTCGTCGCAACGGCGTACCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGCTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTGGACAATGGTTTTCTGAAAGTGGTTCGCTC > NC_000913/3456219‑3456684 | gATCAATAAGCTTTCGCTGACCACCCCTGATGAGGTTTCACAGGCATTAAGTTTACTGCTAACTCAACAAAGTGCTCAGTTTACAATTCGTCGCAACGGCGTACTCCGCTTGATAAATGTTGCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGTAAGGACTCAATAAAAGCTCCTGCTGCTTGCTTGCAGCACTACTCATGCCTTGTTCAGGACACGGTGAGAACGAACAATACGGCGCGAAc < 1:239635/251‑1 (MQ=255) aGGCATTAAGTTTACTGCTAACTCAACATATTGCTCAGTTTACAATTCGTCGCAACGGCGTACCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTggg < 1:107100/251‑1 (MQ=255) gTTTACTGCTAACTCAACAAAGTGCTCAGTTTACAATTCGTCGCAACGGCGTACCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTTTGCTGGACACGTTGAGAACTAACAATACgg < 1:259403/194‑1 (MQ=255) cAATTCGTCGCAACGGCGTACCCCGCTTGATAAATGTTTACGTCGGGGAACTTACAGGAATGAATGGCCTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAgaacgaac > 1:217293/1‑154 (MQ=255) gtcgCAACGGCGTCCCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTCCTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCt > 1:260207/1‑212 (MQ=255) gCAACGGCGTACCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCAt > 1:88083/1‑251 (MQ=255) atgGACTGCGTCATGAAAGGACTCAATAAAAGCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTGCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGTAGTACTAGCAGTTCttttt < 1:112997/251‑1 (MQ=255) cTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGt > 1:10540/1‑250 (MQ=255) gAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCGGATCGGCCCTGCGGTACAGGGAACCATGTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATc < 1:322582/251‑1 (MQ=255) gttccgaccttccgttttcccgtctctGGCAGCACTTATCAATCCTTGTGCAAGACACGTTGAGAACGAAAAAAACGGCCGGAAATTCAATAACGCCGATAACCGCCAGTTCGTGGGAATAGTGGGTCAGCATCTTGGCAAAACGAACCCGGACGACCCTTCGGTACCGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACg < 1:11358/226‑1 (MQ=255) gcttgctGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTGCTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTg < 1:42591/251‑1 (MQ=255) gcttgctGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGGCGCGAACGTCAAGAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGAGCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACTCAGTAATTATACGTTTATCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTg < 1:211803/251‑1 (MQ=255) cttgctGGCAGCACTACTCATGCCTTGTGCAGGACACGTTGAGAACGAACAATACGACGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTgg > 1:186960/1‑251 (MQ=255) cttgctGGCAGCACTACTCATGCCTCNTGCAGGNNACNTTGAGAACGAACAATACGGNGCNNNCNNNANTCACGNCGNNATCCGACAGNTCGTGGAAATAGTGGGTCAGAATCTTGGCAAAACGATCCTGATCGACCCTTCCNTACAGGGCANNATTTCCGTACGCAGTAATGATNCGTNNANNCNACa > 2:74332/1‑189 (MQ=255) gCAGGACACGTTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAACCGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTGGACACTGGTTTTCTGAACGTGGTTCGCTc > 1:245314/1‑251 (MQ=255) | GATCAATAATCTTTCGCTGACCCACCCTGATGAGGTTTCACAGGCATTAAGTTTACTGCTAACTCAACAAAGTGCTCAGTTTACAATTCGTCGCAACGGCGTACCCCGCTTGATAAATGTTTCCGTCGGGGAACTTACAGGAATGAATGGACTGCGTCATGAAAGGACTCAATAAAATCACCTGCTGCTTGCTGGCAGCACTACTCATGCCTTGTGCAGGACACGCTGAGAACGAACAATACGGCGCGAACTTCAATAACGCCGATATCCGCCAGTTCGTGGAAATAGTGGGTCAGCATCTTGGCAAAACGATCCTGATCGACCCTTCGGTACAGGGAACCATTTCCGTACGCAGTAATGATACGTTTAGCCAACAGGAGTACTACCAGTTCTTTTTAAGTATTCTTGATCTTTACGGTTATTCCGTGATCACGCTGGACAATGGTTTTCTGAAAGTGGTTCGCTC > NC_000913/3456219‑3456684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |