| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 345,165 | G→A | intergenic (+174/‑239) | yahL → / → yahM | uncharacterized protein YahL/uncharacterized protein YahM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 345,165 | 0 | G | A | 88.9% | 17.1 / ‑5.8 | 9 | intergenic (+174/‑239) | yahL/yahM | uncharacterized protein YahL/uncharacterized protein YahM |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/4); minor base C (0/1); total (4/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGAGTGCAGGAATTAGGTGACAGATATTATCCTGTAAATAAGCACGTTAAAATCCGCTACACTCTTTAGTTCAGAAAGGGTTCCACCTGCAAGTTGTTATTCCACCTGAGAGTGAATCGCAATGCAGGTAATCATTTCATCTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCC‑ATCATGTTTGTGTGGGGTCTTTT‑CTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGT‑AAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGG > NC_000913/344923‑345410 | agagTGCAGGAATTAGGTGACATATATTATCCTGTAAATAAGCACACTAAAATCCGCTACACTCTTTAGTTCAGAAAGGGTTCCACCTGCAAGTTGTTATTCCACCTGAGAGTGAATCGCAATGCAGGTAATCATTTCATCTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTCTGATCGCCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAACCATGCgg < 1:220814/251‑1 (MQ=255) tgTTCCACCTGCAAGTTGTTATTCCACCTGAGAGTGAATCGCAATGCAGGTAATCATTTCATCTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTTTTGGGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAACCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGa < 1:318357/207‑1 (MQ=255) gagTGAATCGCAATGCAGGTAATCATTTCATCTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGGGGTTTCGCAACCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGATTGTGTTGGTTGACATTCatat > 1:71621/1‑199 (MQ=255) cnccangnngnntaTNATTTCATCTGTATATCTGTATNNCAACTGGCANTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAANAAGCACCAGNNGTNGTTTCNCNNNCNNNCGNTGTATAAAAAATGATCTCANGCNNATGTTTNGTGAAGGTGTTGGTTGACATTCatat < 2:71621/178‑1 (MQ=255) gtatGCCAACTGGCATTCAATCTCTTTTTTCGACGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAGGCACCAGTAGTGGTTTCGCAACCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCC‑ATCATGTTTGTGTGGGGTCTTTT‑CTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGT‑AAGGCTc > 1:276753/1‑251 (MQ=255) cTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAACCCTGCGGTGTATAAAACATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCC‑ATCATGTTTGTGTGGGGTCTTTT‑CTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGT‑AAGGCTCATATCAAAAACCGc > 1:156841/1‑207 (MQ=255) gCTTAAAAAAGCACCAGTAGTGGTTTCGCAACCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACNNTCATATNna > 2:20189/1‑99 (MQ=255) gCTTAAAAAAGCACCAGTAGTGGTTTCGCAACCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCC‑ATCATGTTTGTGTgggg < 1:20189/131‑1 (MQ=255) ggttCGCAACCATGCGGGGTATAAAAAATTATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATa < 1:178596/85‑1 (MQ=255) cGCACCCATGGGGTGTAAAAAAAAGGATCTCATGCAGTTGTTTTGTGAATTTTTTGGTTGACTTTCATATAAAAAAAAACA‑AATTCCCATCTTTTTTGT‑TGGGGTTTTTTTCTGTATCTAGCGCATCCCACTCAGGCCGAACAGAAAAGA‑GTTGGGAAGGTTGATATCAAAATCCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCgg < 1:135482/250‑1 (MQ=255) | AGAGTGCAGGAATTAGGTGACAGATATTATCCTGTAAATAAGCACGTTAAAATCCGCTACACTCTTTAGTTCAGAAAGGGTTCCACCTGCAAGTTGTTATTCCACCTGAGAGTGAATCGCAATGCAGGTAATCATTTCATCTGTATATCTGTATGCCAACTGGCATTCCATCTCTTTTTTCGCCGATATTTTGTTGTGATCGGCGACACTTCGCTTAAAAAAGCACCAGTAGTGGTTTCGCAGCCATGCGGTGTATAAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCC‑ATCATGTTTGTGTGGGGTCTTTT‑CTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGT‑AAGGCTCATATCAAAAACCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGG > NC_000913/344923‑345410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |