| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,899,684 | C→T | G197D (GGC→GAC) | ygcW ← | putative deoxygluconate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,899,684 | 0 | C | T | 91.7% | 23.3 / ‑3.3 | 12 | G197D (GGC→GAC) | ygcW | putative deoxygluconate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (5/6); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-01 | |||||||||||
AAATGGAATAATCATTAATAAGAGAAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTT‑GGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTT > NC_000913/2899441‑2899843 | aaaTGGAATAATCATTAATAAGAGAAAACAGAAACCACCGTTATGGGTTAGCGAACTAACTAACCGCCATCAACCACTAATAAATACCCGTTGACATAATTCGATGCAGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCAGGGGc > 1:171975/1‑251 (MQ=255) ccaccGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCAGGGGCGATACCATTTTCCGGAATATTATATTGACCTAGt < 1:109485/251‑1 (MQ=255) aGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTTCGTGTCGCCAGCGTAATATCGGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCt < 1:166621/251‑1 (MQ=255) cATAATTAGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATaa > 1:88651/1‑203 (MQ=255) aaTACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTTACCTAGTtcatcan < 1:96988/172‑2 (MQ=255) aaTCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCACGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATGTGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTT‑GGTGAACCCGGCAAGAGCATGTTTAGTGACAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaat > 1:134800/1‑250 (MQ=255) aGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTTTTGCATAATAGTCAGGTGCGATACCATTTACCTGAATATTATAGTGACCTAGTTCATCACAATAAGCTTT‑GGTGAACCCGTCAAGAGCATGTTTAGTGTCAGAATAATCAGTTGACCATTGTCCACCGAAGTAAGAGAACAATGAACAGATATTAATAATTTTGc < 1:310791/251‑1 (MQ=255) gCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGGTTACCCCGCGTCGCCAGCGTAATATATGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTGACCTCGCTCATCACAATACGCTTT‑GGTGAACCCGGCCAGCGCATGTTTCGTGGCAGCATATGCAGGTGACCATTGTCCACCTACGTCAGAGAACAATGAACAGATATTAATAATTTTGCCGCttt > 1:143679/1‑251 (MQ=255) cgcTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTT‑GGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCAcc > 1:23061/1‑173 (MQ=255) tGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTtcatc < 1:285828/101‑1 (MQ=255) ntNCGTGTCGCCAGCGTAATATCTGTTGCATAATAGTCNGGGNNGANNCCNTTTAc < 2:171975/55‑1 (MQ=255) gTAATATCTGTTGCATAATAGTCAGGGGCGATACCATTTACCTGAATCTTATATTGACCTAGTTCCTCACAATCCGCTTTAGGGCAACCCG‑CAAGAGCATGTTTAGAGGAAGAATATGCAGGTGACCATTGTCCAc > 1:164903/1‑136 (MQ=255) | AAATGGAATAATCATTAATAAGAGAAAACAGAAACCACCGTTATGGGTTAGCGCACTAAATAACCGCCATCAACCACTAATAAATGCCCGTTGACATAATTCGATGCCGGACTTGCGAGGAATACGGCTGCGCCCATTAAATCCTGAGTATCGCCCCAACGGTTTGCCGGAATATGATCAAGAACGCGCTGATTGGTTTCTGGATTACTGCGTGTCGCCAGCGTAATATCTGTTGCATAATAGCCAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTT‑GGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTT > NC_000913/2899441‑2899843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |