| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,686,812 | G→C | Q326H (CAG→CAC) | hmp → | nitric oxide dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,686,812 | 0 | G | C | 93.8% | 37.8 / ‑3.6 | 16 | Q326H (CAG→CAC) | hmp | nitric oxide dioxygenase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (9/6); total (10/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
GGCTGTCGCAGATGACACACCAGTGACGTTAATCTCTGCCGGTGTTGGTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCAGCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGTTCTATCTCTGCGGCCCGGTTGGCTTCATGCAGTTTACCGCGAAACAGTTAGTGGATCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATGGAAACATCCGGCAAC > NC_000913/2686596‑2687057 | ggCTGTCGCAGATGACACACCAGTGACGTTAATCTCTGCCGGTGTTGGTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGttt < 1:162195/250‑1 (MQ=255) gATGACACACCAGTGACGTTAATCTCTGCCGGTGTTGGTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCAGCCGAGCGAAGCCGATCGCGCTAACGGTCAGTTTGATAGCGAAgg > 1:298602/1‑251 (MQ=255) gATGACACACCAGTGACGTTAATCTCTGCCGGTGTTGGTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAgg > 1:86617/1‑251 (MQ=255) ccggcagagattaacgtcactggTGTTGGTCAAACGCCACTGCTGGCACTGCCCGCCACGCTCGCAAAAGCAGGCCACACAGCACAAGTGCACTGGTTCCATGCGGCAGAAAATGGCGCTGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATgg > 1:45008/22‑250 (MQ=255) gTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTGTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAATGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGc < 1:44582/251‑1 (MQ=255) gCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGGCTGATGGATTGGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGc < 1:288524/251‑1 (MQ=255) tGGCAATGCTCGACACGCTGGCAAAAGCAGGC‑‑CACAGCACAAGTGAACTGGATCCATGCGGAAGCAAATGGCGATGTTCACGCCTTTGCCGACGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGCCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGtt > 1:189206/1‑251 (MQ=255) tCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCAGCTGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGc > 1:287531/1‑182 (MQ=255) gCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTGGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCATGTCTATCTCTGCGGCCCGGTGGGCTTCATGCAGTTTACCGCGAAACAGTTAGTGGATCTggg < 1:279551/251‑1 (MQ=255) gCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTCAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGTTCTAtc > 1:156778/1‑186 (MQ=255) gATGTTCACTCGTTTGCCGCTGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGAATCGTCACCCGAGCGAAGCAGATCGCGCTaaa > 1:248948/1‑105 (MQ=255) gTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGGTCTGTCTCTGCGGCCCGGTTGGCTTCATGCAGTTTACCGCGAAACAGTTAGTGGATCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTgg < 1:282316/251‑1 (MQ=255) gCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATcc < 1:111920/129‑1 (MQ=255) attCACTGCCGCGCTTTACCGCGCACACCTGGTATCGACACCCGAGCGAAGCCGCTCGCGCTAAAGGTCAGTTTGATAGCGCAGGTCTGATGGATTTGAGCAAACTGGAAGGAGCGTTCAGCGATCCGACAAt > 1:307521/3‑133 (MQ=255) gTCACTGCCGCGCTTTACCGAGCAAACCTGGTATAGTTACCCGAGCGAAGCCGATCGCGCTACAGCTCAATTTGGTAGCGAAGTTCTGATGGAATTGAGCAAACTAGAAGGTGCGCTCAGCGACCCGACACTGCAGTTCTATCTCTGCGGCCCGGTTGGCTTCCTGCAGTTTACCGCGCAACCGTTAGTGGGTCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCACGAATAAGGTGCTGt > 1:279192/1‑251 (MQ=255) cGTCACCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGTTCTATCTCTGCGGCCCGGTTGGCTTCATGCAGTTTACCGCGAAACAGTTAGTGGATCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATGGAAACATCCGGCAAc > 1:13669/1‑251 (MQ=255) | GGCTGTCGCAGATGACACACCAGTGACGTTAATCTCTGCCGGTGTTGGTCAAACGCCAATGCTGGCAATGCTCGACACGCTGGCAAAAGCAGGCCACACAGCACAAGTGAACTGGTTCCATGCGGCAGAAAATGGCGATGTTCACGCCTTTGCCGATGAAGTTAAGGAACTGGGGCAGTCACTGCCGCGCTTTACCGCGCACACCTGGTATCGTCAGCCGAGCGAAGCCGATCGCGCTAAAGGTCAGTTTGATAGCGAAGGTCTGATGGATTTGAGCAAACTGGAAGGTGCGTTCAGCGATCCGACAATGCAGTTCTATCTCTGCGGCCCGGTTGGCTTCATGCAGTTTACCGCGAAACAGTTAGTGGATCTGGGCGTGAAGCAGGAAAACATTCATTACGAATGCTTTGGCCCGCATAAGGTGCTGTAATTTGATGTTGCCGGATGGAAACATCCGGCAAC > NC_000913/2686596‑2687057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |