| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,187,922 | C→T | A165T (GCA→ACA) | yehA ← | putative fimbrial adhesin YehA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,187,922 | 0 | C | T | 94.7% | 40.8 / ‑6.2 | 19 | A165T (GCA→ACA) | yehA | putative fimbrial adhesin YehA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (5/13); minor base G (1/0); total (6/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
TTCCGTGATGTTTGATTTTGTTGACCTAATAAATTTTTACAACGCAGAATAATATCCCCTTGTTTACTATTTATTGTTGCTTTGTTACCTGTGGCTGGTAATTGTGAAACGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGCATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAACCGCCGCCCCCCGCAGAAACATTCACTTTTGCATTACTGGCCGCAGGTGTCACCGTAACTGAATAACCACTGG > NC_000913/2187678‑2188104 | ttCCGTGATGTTTGATTTTGTTGACCTAATAAATTTTTACAACGCAGAATAATATCCCCTTGTTTACTATTTATTGTTGCTTTGTTACCTGTGGCTGGTAATTGTGAAACGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATccc < 1:249026/250‑1 (MQ=255) gATTTTGTTGACCTAATAAATTTTTACAACGCAGAATAATATCCCCTTGTTTACTATTTATTGTTGCTTTGTTACCTGTGGCTGGTAATTGTGAAACGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCAcc < 1:246308/250‑1 (MQ=255) aataTCCCCTTGTTTACTATTTATTGTTGCTTTGTTACCTGTGGCTGGTAATTGTGAAACGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCcnc < 1:255226/251‑1 (MQ=255) cGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAAccgccg > 1:151200/1‑251 (MQ=255) ntCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAAccgcc > 1:193348/2‑240 (MQ=255) cAGGTTGTGGTTATCGGGATGTATGACAATGTCAGATTACAGGAATAGATAACTGCATTTTGTGCAACTACATTTCTATAGCTGTTTACAACTGTCTCCAATGACTTGCCACCTGGTCAACATCGTAGAAA‑ATGTACTGAGGCCCTAACGCGAGTCGATGATGAAGCCCTGGATAATGTAGCAACACCATTAATCATCACTGAACAGCCGCCCCCCGCAGAAACa > 1:239423/1‑225 (MQ=255) agtttGTGGTTTTCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCTCGTGTCGATGATGAAGCACTGGAGAATGGCGCAACACCATGAATCATCAGTGAACCGCCGCCCCCCGCAGAATCATTCACTTTTGCATTACTGGCCGCAGgt < 1:309085/248‑1 (MQ=255) nnnnnnntncgnntttanacaCAATGTCAGATAAAAAGAATANACACCTGCATTTAGTGCCCATGCATCGCCGANGNTAGTAACACATGTATCCCATGACTTGCCCCCTAATAAACACAGTGGAANGTTG‑ACAGCGNCGCNNCCGTNGNTNGATGAGGGAGCACGGGATAGTGTTGCACCNCCATGAATCATTAGTGAACCGCCNNCCNNNGGNNAAACa < 2:239423/200‑1 (MQ=255) ggTTATCGTGTTTTATGACAATGTCAGATTAAAGGAATAGTCACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGGAGAAA‑TTTTACTGCGGCACTCCCGCGTTTCGATGATGAATCCCGTGATAAGGTCGCAACTCCGTTAATCATCACTTAACCGCCGCCCCCCGCCGAAACATTCACTTTTGCATTACTGGCCGCAGGTGTCAcc < 1:218959/250‑1 (MQ=255) gggTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGNNTTGCCANNt > 2:9766/1‑99 (MQ=255) gggTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGc < 1:9766/167‑1 (MQ=255) ggTTGTATGACAATGGCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATTAAg < 1:278710/150‑1 (MQ=255) gTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTAAACATGTATCCAATGACTTGCCACCTAATAAACACAGTAg > 1:179794/1‑108 (MQ=255) cAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAACCGCCGCCCCCCGCAGAAACATTCACTTTTGCATTACTGGCCGCAGGTGTCACCGTAACTGAATAACCACTgn < 1:200085/251‑2 (MQ=255) nnnnnncANNNNNTTTNTGTAGCTATTTACACATGTATCCCATGACTTGCCCCCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAAccgcc < 2:193348/144‑1 (MQ=255) ccAATGCATTTCTGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAatcatc < 1:133243/134‑1 (MQ=255) tGTAGCTATTTACACATGTATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCcgcn < 1:96329/76‑2 (MQ=255) tttACNCCTGGNTNNCATGACTTGCAACCTAATANACACAGTAGAAA‑TTGNACTGNGGCACNCCngn > 2:121892/1‑66 (MQ=255) gttACACATGTATCCCATGACTTGCCTCCTAATAGACGCAGTAGAAA‑GTGGACGGCTGCACTCCCGCGTGTCGATGATGAATCACTGGATAATGTCGCAACACCATTa < 1:121892/107‑1 (MQ=255) | TTCCGTGATGTTTGATTTTGTTGACCTAATAAATTTTTACAACGCAGAATAATATCCCCTTGTTTACTATTTATTGTTGCTTTGTTACCTGTGGCTGGTAATTGTGAAACGGGAATACTGTCTAAAGTAATTAATAAATCGTCCGGTTTGCAGGTTGTGGTTATCGGGTTGTATGACAATGTCAGATTAAAGGAATAGACACCTGCATTTTGTGCCAATGCATTTCTGTAGCTATTTACACATGCATCCCATGACTTGCCACCTAATAAACACAGTAGAAA‑TTGTACTGCGGCACTCCCGCGTGTCGATGATGAAGCACTGGATAATGTCGCAACACCATTAATCATCACTGAACCGCCGCCCCCCGCAGAAACATTCACTTTTGCATTACTGGCCGCAGGTGTCACCGTAACTGAATAACCACTGG > NC_000913/2187678‑2188104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |