| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,026,760 | C→T | A420T (GCT→ACT) | dgcQ ← | diguanylate cyclase DgcQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,026,760 | 0 | C | T | 90.0% | 21.2 / NA | 10 | A420T (GCT→ACT) | dgcQ | diguanylate cyclase DgcQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/5); minor base G (0/1); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCCGCAGCCTCCGTCAGACTCGCGCCTGGCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATG > NC_000913/2026533‑2026896 | cTCCGCAGCCTCCGTCAGACTCGCGCCTGGCAGACTCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGATAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAAc > 1:114890/1‑250 (MQ=255) ccGTCAGACTCGCGCCTGGCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAATGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAAGGGTCAAGAGCGACCTGAATGACAGAAAAAGGATGTTGTTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAACAGTGCGCCACgg < 1:41645/251‑1 (MQ=255) ccaccGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACGCGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATGGCTTTAAAAGGGTCAAGAGCGACCTGAATGACAGAAAAAGGATGTTGGTGCGGCTCACACAGTTTAGGGGGCGGAGGGGCGTTGGCGAACAGGGCGCCACGGTTATATAAAGGCGTGAAGGTGTCGTGCCACGCCTGCCACTg < 1:127539/251‑1 (MQ=255) ncccgcccgGCAACGTCCTGCGCACGCAAGGAACTACTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACg > 1:66056/2‑250 (MQ=255) cNGCNNACGCNATGAACTGCTAATTAATCCGGCAGNATGAGAAAGAACACGGTCGCCCGCCTGATGCNCNAAGCGGTCATTAATCGCTTTAAAAGGGTCAAGATCGACCTGAATGACANAAAAAGGATGNTGGNNCGTCNGNCNCAATTTAGTGAGCGGACGGGCTTTTTCGANCAGTGCGCCACGGTTATATAAACNNGTNNNGGNNTCGTg < 2:240144/213‑1 (MQ=255) aCTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATcc < 1:11967/251‑1 (MQ=255) nnnnnngcnNNNNAAANAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAACAGt < 2:204907/144‑1 (MQ=255) aaTCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGTGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATg < 1:186049/208‑1 (MQ=255) aaaaTGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTCGTGCGTCTGACACCATTTAGTGAGCGGACGGGCTTTTTCGAACAGTGCGACACGGTACTATAAACGCGTTAAGGTGTAGTGCCACGc > 1:283431/1‑129 (MQ=255) gATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACCCAATTTAGTGAGCGGACGGGCTTTTTc > 1:69162/1‑70 (MQ=255) | CTCCGCAGCCTCCGTCAGACTCGCGCCTGGCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATG > NC_000913/2026533‑2026896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |