Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,792,772	IS2 (–) +5 bp	intergenic (‑41/+33)	nlpC ← / ← btuD	NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1469240	NA (NA)	8 (0.570)	6/306	0.6	100%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	1792772 =	0 (0.000)					intergenic (‑41/+37)	nlpC/btuD	NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit
*	?	NC_000913	= 1651548	NA (NA)	10 (0.700)	7/310	0.4	100%	noncoding (706/706 nt)	IS2	repeat region
	?	NC_000913	= 1792776	0 (0.000)					intergenic (‑45/+33)	nlpC/btuD	NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit

ACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCACCTCTTCCCTGCGTCCACTGGCCAGCATTTTTCCACCTTTTAGCAACCACGCCCGATGCGCATGACGCAATGTGTGGTTGAGATCGTGACTGCTCATCACAATCGCCAGTC  >  NC_000913/1792546‑1793011                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                            aCAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAGAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCGGTGATCAAAATAAGGCAGAAACGCATGCCGGACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttc                                                                                                                                                                                                                         >  1:327039‑M2/1‑231 (MQ=255)                                acgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCagn                                                                                                                                                                                          <  1:94979‑M2/56‑2 (MQ=255)                                      gagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCtg                                                                                                                                                                                    >  1:91672‑M2/190‑251 (MQ=255)                                           cGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGCAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacc                                                                                                                                                                                                       <  1:217275‑M2/227‑39 (MQ=255)                                                    ccaGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattc                                                                                                                                                                      <  1:9100‑M2/251‑72 (MQ=255)                                                       gCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                                                                                                                                   <  1:70195‑M2/251‑75 (MQ=255)                                                                         cAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGTCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACTCATTCCGTACGGTTCCGCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttc                                                                                                                                                                                                                         >  1:53724‑M2/1‑159 (MQ=255)                                                                         cAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatc                                                                                                                                                                                                          >  1:124487‑M2/1‑159 (MQ=255)                                                                          aaaCCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTCGCTACACCCGGCCAGCAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataac                                                                                                                                                     <  1:181037‑M2/246‑89 (MQ=255)                                                                                    tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTgc                                                                                                                                       <  1:9082‑M2/107‑1 (MQ=255)                                                                                                    aGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                                       >  1:118417‑M2/1‑132 (MQ=255)                                                                                                                         cggTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                                       >  1:125160‑M2/1‑111 (MQ=255)                                                                                                                                 cnatcatctgttctcaaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCa                                                                                                                 >  1:255839‑M2/99‑227 (MQ=255)                                                                                                                                        ctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCAc                                                                                                                <  1:215011‑M2/130‑1 (MQ=255)                                                                                                                                                               ntgtgaTCAAAATAAGGCAGACACGAATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatg                                                            <  1:262228‑M2/249‑178 (MQ=255)                                                                                                                                                                                                                      gggggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCACCTCTTCCCTGCGTCCACTGGCCAGCatttttn                                                                                <  1:61142‑M2/162‑2 (MQ=255)                                                                                                                                                                                                                        gggccagtctaGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCACCTCTTCCCTGCGTCCACTGGCCAGCATTTTTCCACCTTTTAGCAACCACGCCCGCTGCGCATGACGCAATGTGTGGTTGAGATCGTGACTGCTCATCACAATCGCcagac  >  1:218485‑M2/12‑249 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                            ACAGTCCACACCGCGCCGCGTCATGCCACCATAACGATACGGCGTGCCATGCCAGCTTTGTAGCTGGTCGTTCAAACCGGCAATAACGGTAATCGAATCAGAAAGTCTGGCATTTGGCGGCGGTGCTTTATGGTGGCTACACCCGGCCAGAAGCAGTGCTGTGATCAAAATAAGGCAGAAACGCATTCCGTACGGTTCCTCTGTTTTTTATTCTTGCATTAATTTAGCGTCGTAATTACCCGATTTTCAAGATACTAATGAAATCAGATGGTCGAAATCAGCATTCTGTGACCTTCGATATCCAGACGGCGAAAATTCATCCCATAGGCCTGCGCCAGATTTGGCGGCGTGAGCACCTCTTCCCTGCGTCCACTGGCCAGCATTTTTCCACCTTTTAGCAACCACGCCCGATGCGCATGACGCAATGTGTGGTTGAGATCGTGACTGCTCATCACAATCGCCAGTC  >  NC_000913/1792546‑1793011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.